View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_44 (Length: 390)
Name: NF2729_high_44
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 24 - 378
Target Start/End: Complemental strand, 24044940 - 24044586
Alignment:
| Q |
24 |
gatgattggtcctaagagagaaatcctatatctacctctaacttgtgattttcatcaaaaggaaaaacttgtgatcaaaatagtagtacgcaatgataac |
123 |
Q |
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| T |
24044940 |
gatgattggtcctaagagagaaatcctatatctacctctaacttgtgattttcatcaaaagaaaaaacttgtgatcaaaatagtagtacgcaatgataac |
24044841 |
T |
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| Q |
124 |
aatcagcaaagaggaaaaattagcggttcaaccatagcttactaaatttctggctcgctagttaacatttcccatttataattcatttgaatatatgtag |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24044840 |
aatcagcaaagaggaaaaattagcggttcaaccatagcttactaaatttctggctcgctagttaacatttcccatttataattcatatgaatatatgtag |
24044741 |
T |
|
| Q |
224 |
agtttacatatctgctacatgaaaataacatggggcaacatttcaactgagatatcaagattgaaagttttggttcgtccagcatacggaacatgaaatt |
323 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24044740 |
agtttacatatctgctacatgaaaataatatggggcaacatttcaactgagatatcaagattgaaagttttggttcgtccagcatacggaacatgaaatt |
24044641 |
T |
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| Q |
324 |
aatcgcccgtacgtttcatattccttttagttgtaaattaaacctgtcaaatatt |
378 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24044640 |
aatcgcccatacgtttcatattccttttagttgtaaattaaacctgtcaaatatt |
24044586 |
T |
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