View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_45 (Length: 384)
Name: NF2729_high_45
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_45 |
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| [»] scaffold0712 (1 HSPs) |
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| [»] scaffold0709 (1 HSPs) |
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| [»] scaffold0010 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 46846929 - 46846799
Alignment:
| Q |
10 |
aagaaaataagattgttgtgtgacatttacaattttatccgtgatgaaagataaaaatagtggaactaaaataaaaatttaatggcatttaattgcatag |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
46846929 |
aagaatataagattgttgtgtgacatttacaattttattcgtgatgaacgataaaaatagtggaattaaaataaaaatttaatggcatttaattgcattg |
46846830 |
T |
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| Q |
110 |
ttactttttataatatcttcaaataaatgtg |
140 |
Q |
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|||||||||||||||||||||||||| |||| |
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| T |
46846829 |
ttactttttataatatcttcaaataagtgtg |
46846799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 205 - 363
Target Start/End: Complemental strand, 46846734 - 46846588
Alignment:
| Q |
205 |
cgtcattggtaacaaacaattnnnnnnnttgtacaaaattaatatcgcaatatgtttcaaataattatctcaaataagtatcacaaataattattatgaa |
304 |
Q |
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||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
46846734 |
cgtcattggtaacaagcaattaaaaaaattgtacaaaattaatattgcaatatgtttcaaataat-------------tatcacaaataattattatgaa |
46846648 |
T |
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| Q |
305 |
c-aaaaccatatgcacaagagaaggtagggaatagttctggatcggggtagttggagaca |
363 |
Q |
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| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
46846647 |
caaaaaccatatgcacaagagaagggagggaatagttctagatcggggtagttggagaca |
46846588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0712 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0712
Description:
Target: scaffold0712; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 491 - 594
Alignment:
| Q |
32 |
acatttacaattttatccgtgatgaaagataaaaatagtggaactaaaataaaaatttaatggcatttaattgcatagttactttttataatatcttcaa |
131 |
Q |
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||||||| ||||||| |||||||||| ||| |||||||| |||||||||| ||||||||||| | ||||||| | ||||||||||||||||||||||| |
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| T |
491 |
acatttataattttacccgtgatgaacgattaaaatagttgaactaaaattgaaatttaatggtaattaattgtgttgttactttttataatatcttcaa |
590 |
T |
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| Q |
132 |
ataa |
135 |
Q |
| |
|
|||| |
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|
| T |
591 |
ataa |
594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0709 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0709
Description:
Target: scaffold0709; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 511 - 614
Alignment:
| Q |
32 |
acatttacaattttatccgtgatgaaagataaaaatagtggaactaaaataaaaatttaatggcatttaattgcatagttactttttataatatcttcaa |
131 |
Q |
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||||||| ||||||| |||||||||| ||| |||||||| |||||||||| ||||||||||| | ||||||| | ||||||||||||||||||||||| |
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| T |
511 |
acatttataattttacccgtgatgaacgattaaaatagttgaactaaaattgaaatttaatggtaattaattgtgttgttactttttataatatcttcaa |
610 |
T |
|
| Q |
132 |
ataa |
135 |
Q |
| |
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|||| |
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|
| T |
611 |
ataa |
614 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 223243 - 223338
Alignment:
| Q |
40 |
aattttatccgtgatgaaagataaaaatagtggaactaaaataaaaatttaatggcatttaattgcatagttactttttataatatcttcaaataa |
135 |
Q |
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||||||| |||||||||| ||| |||||||| |||||||||| ||||||||||| | ||||||| | ||||||||||||||||||||||||||| |
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| T |
223243 |
aattttacccgtgatgaacgattaaaatagttgaactaaaattgaaatttaatggtaattaattgtgttgttactttttataatatcttcaaataa |
223338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 234085 - 234187
Alignment:
| Q |
32 |
acatttacaattttatccgtgatgaaagataaaaatagtggaactaaaataaaaatttaatggcatttaattgcatagttactttttataatatcttcaa |
131 |
Q |
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||||||| ||||||| |||||||||| ||| |||||||| |||||||||| ||||||||||| | || |||| | ||||||||||||||||||||||| |
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| T |
234085 |
acatttataattttacccgtgatgaacgattaaaatagttgaactaaaattgaaatttaatggtaatt-attgtgttgttactttttataatatcttcaa |
234183 |
T |
|
| Q |
132 |
ataa |
135 |
Q |
| |
|
|||| |
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|
| T |
234184 |
ataa |
234187 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 234933 - 235035
Alignment:
| Q |
32 |
acatttacaattttatccgtgatgaaagataaaaatagtggaactaaaataaaaatttaatggcatttaattgcatagttactttttataatatcttcaa |
131 |
Q |
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|
||||||| ||||||| |||||||||| ||| |||||||| |||||||||| ||||||||||| | || |||| | ||||||||||||||||||||||| |
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| T |
234933 |
acatttataattttacccgtgatgaacgattaaaatagttgaactaaaattgaaatttaatggtaatt-attgtgttgttactttttataatatcttcaa |
235031 |
T |
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| Q |
132 |
ataa |
135 |
Q |
| |
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|||| |
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| T |
235032 |
ataa |
235035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 22029592 - 22029489
Alignment:
| Q |
32 |
acatttacaattttatccgtgatgaaagataaaaatagtggaactaaaataaaaatttaatggcatttaattgcatagttactttttataatatcttcaa |
131 |
Q |
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|
||||||| ||||||| |||||||||| ||| |||||||| |||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||| |
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| T |
22029592 |
acatttataattttacccgtgatgaacgattaaaatagttgaactaaaattgaaatttaatggtaattaattgtgctgttactttttataatatcttcaa |
22029493 |
T |
|
| Q |
132 |
ataa |
135 |
Q |
| |
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|||| |
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|
| T |
22029492 |
ataa |
22029489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 44339743 - 44339640
Alignment:
| Q |
32 |
acatttacaattttatccgtgatgaaagataaaaatagtggaactaaaataaaaatttaatggcatttaattgcatagttactttttataatatcttcaa |
131 |
Q |
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||||||| ||||||| |||||||||| ||| |||||||| |||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||| |
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| T |
44339743 |
acatttataattttacccgtgatgaacgattaaaatagttgaactaaaattgaaatttaatggtaattaattgtgctgttactttttataatatcttcaa |
44339644 |
T |
|
| Q |
132 |
ataa |
135 |
Q |
| |
|
|||| |
|
|
| T |
44339643 |
ataa |
44339640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 23688381 - 23688484
Alignment:
| Q |
32 |
acatttacaattttatccgtgatgaaagataaaaatagtggaactaaaataaaaatttaatggcatttaattgcatagttactttttataatatcttcaa |
131 |
Q |
| |
|
||||||| ||||||| |||||||| ||| |||||||| |||||||||| ||||||||||| | ||||||| | ||||||||||||||||||||||| |
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|
| T |
23688381 |
acatttataattttacttgtgatgaacgattaaaatagttgaactaaaattgaaatttaatggtaattaattgtgttgttactttttataatatcttcaa |
23688480 |
T |
|
| Q |
132 |
ataa |
135 |
Q |
| |
|
|||| |
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|
| T |
23688481 |
ataa |
23688484 |
T |
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