View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2729_high_47 (Length: 367)

Name: NF2729_high_47
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2729_high_47
NF2729_high_47
[»] chr4 (7 HSPs)
chr4 (256-343)||(8743801-8743888)
chr4 (285-341)||(55476025-55476080)
chr4 (285-340)||(20812576-20812631)
chr4 (294-343)||(8409679-8409727)
chr4 (108-182)||(6347022-6347096)
chr4 (290-343)||(18327738-18327791)
chr4 (290-343)||(18437608-18437661)
[»] chr2 (4 HSPs)
chr2 (290-343)||(27749785-27749838)
chr2 (290-343)||(19519433-19519486)
chr2 (294-343)||(974383-974431)
chr2 (285-343)||(41002062-41002119)
[»] chr6 (11 HSPs)
chr6 (283-343)||(28669362-28669422)
chr6 (283-343)||(7622004-7622064)
chr6 (228-341)||(1178938-1179051)
chr6 (49-142)||(1178785-1178880)
chr6 (283-342)||(27890420-27890478)
chr6 (109-187)||(4597104-4597182)
chr6 (219-273)||(12245316-12245370)
chr6 (293-343)||(31108200-31108250)
chr6 (290-343)||(33593187-33593240)
chr6 (283-335)||(4596883-4596935)
chr6 (283-339)||(31407341-31407397)
[»] chr3 (4 HSPs)
chr3 (283-343)||(6861163-6861223)
chr3 (283-339)||(26207590-26207646)
chr3 (109-156)||(15806490-15806537)
chr3 (299-343)||(8566248-8566291)
[»] chr1 (8 HSPs)
chr1 (283-337)||(39845256-39845310)
chr1 (285-335)||(24117544-24117594)
chr1 (290-343)||(22789253-22789306)
chr1 (220-273)||(39845459-39845512)
chr1 (283-343)||(12002945-12003004)
chr1 (109-164)||(4631-4686)
chr1 (300-341)||(16434588-16434629)
chr1 (290-326)||(8773014-8773050)
[»] chr7 (5 HSPs)
chr7 (291-343)||(7307054-7307106)
chr7 (253-331)||(4574729-4574806)
chr7 (283-343)||(1981358-1981417)
chr7 (51-98)||(4574509-4574557)
chr7 (109-155)||(8254293-8254339)
[»] chr5 (2 HSPs)
chr5 (283-343)||(19377647-19377706)
chr5 (290-343)||(187907-187960)
[»] scaffold1178 (1 HSPs)
scaffold1178 (283-327)||(381-425)
[»] scaffold0017 (1 HSPs)
scaffold0017 (283-343)||(128711-128770)
[»] chr8 (2 HSPs)
chr8 (233-281)||(26575454-26575502)
chr8 (283-343)||(26879594-26879654)


Alignment Details
Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 8743888 - 8743801
Alignment:
Q  256 tctataaatacataaaaagccaagttctgtctaagttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    ||||||||||||||| |  || |||| |||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||||||||    
T  8743888 tctataaatacataatagaccgagttttgtctaggttgtttaacattattatgactactaaagaatatttgacatctaagctttgagt 8743801  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 285 - 341
Target Start/End: Original strand, 55476025 - 55476080
Alignment:
Q  285 tctaagttgtttatcattattatgactactaaataatatttgacatctaggctttga 341  Q
    |||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  55476025 tctaggttatttatcattattatgactactaaagaatatttg-catctaggctttga 55476080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 340
Target Start/End: Original strand, 20812576 - 20812631
Alignment:
Q  285 tctaagttgtttatcattattatgactactaaataatatttgacatctaggctttg 340  Q
    |||| |||||||| ||||||||||||||||||| |||||||||||| || ||||||    
T  20812576 tctaggttgtttagcattattatgactactaaagaatatttgacatatatgctttg 20812631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 8409679 - 8409727
Alignment:
Q  294 tttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||||    
T  8409679 tttagcattattatgactactaaagaatatttg-catctaggctttgagt 8409727  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 6347096 - 6347022
Alignment:
Q  108 taaaatcctagtaaaatcacacaaaatcgtgaaatacattcataatcgccgaattttacacagttttgaaggatt 182  Q
    |||||||| ||||||||| |||||||||||||||| ||  || |||||| | |||||| |  |||||||||||||    
T  6347096 taaaatccaagtaaaatcgcacaaaatcgtgaaattcacacaaaatcgcaggattttaaagggttttgaaggatt 6347022  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 18327738 - 18327791
Alignment:
Q  290 gttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||||||| |||||| |||||||||||| |||||||||||| |||  |||||||    
T  18327738 gttgtttaacattatcatgactactaaaaaatatttgacatttagattttgagt 18327791  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 18437661 - 18437608
Alignment:
Q  290 gttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||||||| |||||| |||||||||||| |||||||||||| |||  |||||||    
T  18437661 gttgtttaacattatcatgactactaaaaaatatttgacatttagattttgagt 18437608  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 27749838 - 27749785
Alignment:
Q  290 gttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27749838 gttgtttaacattattatgactactaaataatatttgacatctaggctttgagt 27749785  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 19519433 - 19519486
Alignment:
Q  290 gttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||||| | ||||||||||||||||||||||||||||||||||||| |||||||    
T  19519433 gttgttcagcattattatgactactaaataatatttgacatctaggttttgagt 19519486  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 343
Target Start/End: Original strand, 974383 - 974431
Alignment:
Q  294 tttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||||    
T  974383 tttaacattattatgactactaaagaatatttg-catctaggctttgagt 974431  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 343
Target Start/End: Original strand, 41002062 - 41002119
Alignment:
Q  285 tctaagttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||| ||| |||| ||||||||||||||||||| |||||||| |||||||| |||||||    
T  41002062 tctaggttatttagcattattatgactactaaaaaatatttg-catctaggttttgagt 41002119  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 28669362 - 28669422
Alignment:
Q  283 tgtctaagttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||    
T  28669362 tgtctaagttgtttagtattattatgactactaaagaatatttgacatctaggctttgagt 28669422  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 283 - 343
Target Start/End: Complemental strand, 7622064 - 7622004
Alignment:
Q  283 tgtctaagttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||||| ||||||||||||||| |||||||||||| ||||||||||||||||| |||||||    
T  7622064 tgtctaggttgtttatcattatcatgactactaaagaatatttgacatctaggatttgagt 7622004  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 341
Target Start/End: Original strand, 1178938 - 1179051
Alignment:
Q  228 ttgatccggtttgtacccgtgatccggttctataaatacataaaaagccaagttctgtctaagttgtttatcattattatgactactaaataatatttga 327  Q
    |||||| |||||  |||||||| |  |||||||||||||||||||  ||||||| ||||||  ||||||| |||| ||||||||| |||| ||| |||||    
T  1178938 ttgatctggtttcaacccgtgacctagttctataaatacataaaagaccaagttttgtctagattgtttagcatttttatgactagtaaagaatgtttga 1179037  T
Q  328 catctaggctttga 341  Q
    ||| || |||||||    
T  1179038 catataagctttga 1179051  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 1178785 - 1178880
Alignment:
Q  49 aaaattttgcgattttactcaccttcaacgatt-taattcattgcagaattctaaaacatta-aaatcctagtaaaatcacacaaaatcgtgaaat 142  Q
    ||||||||||||| |||||||||||||||||||  ||| |||||||||||   ||||||  | ||||||| ||||| |||||||||||||||||||    
T  1178785 aaaattttgcgatgttactcaccttcaacgattcaaatccattgcagaatcacaaaacaagataaatcctggtaaattcacacaaaatcgtgaaat 1178880  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 27890420 - 27890478
Alignment:
Q  283 tgtctaagttgtttatcattattatgactactaaataatatttgacatctaggctttgag 342  Q
    |||||| |||||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  27890420 tgtctaggttgtttagcattattatgactactaaagaatatttg-catctaggctttgag 27890478  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 4597182 - 4597104
Alignment:
Q  109 aaaatcctagtaaaatcacacaaaatcgtgaaatacattcataatcgccgaattttacacagttttgaaggattctagc 187  Q
    ||||||||||||||| |||||| ||||||||||| ||| || |||||  | |||||||| | |||||||||||||||||    
T  4597182 aaaatcctagtaaaaccacacataatcgtgaaattcatgcaaaatcgttggattttacataattttgaaggattctagc 4597104  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 12245316 - 12245370
Alignment:
Q  219 atttgtcaattgatccggtttgtacccgtgatccggttctataaatacataaaaa 273  Q
    |||| |||||||| | | |||||||||||||||| ||||||||||||||||||||    
T  12245316 atttttcaattgacctgatttgtacccgtgatccagttctataaatacataaaaa 12245370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 31108200 - 31108250
Alignment:
Q  293 gtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    ||||| ||||||||||||||| ||| || ||||||||| ||||||||||||    
T  31108200 gtttaccattattatgactaccaaagaacatttgacatgtaggctttgagt 31108250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 33593240 - 33593187
Alignment:
Q  290 gttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||||||| ||||||||||| ||||| | |||||||||||| || |||||||||    
T  33593240 gttgtttagcattattatgattactatagaatatttgacatttaagctttgagt 33593187  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 4596935 - 4596883
Alignment:
Q  283 tgtctaagttgtttatcattattatgactactaaataatatttgacatctagg 335  Q
    |||||||||||| || ||||||||| |||||||||  ||||||| ||||||||    
T  4596935 tgtctaagttgtgtagcattattatcactactaaaagatatttggcatctagg 4596883  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 31407341 - 31407397
Alignment:
Q  283 tgtctaagttgtttatcattattatgactactaaataatatttgacatctaggcttt 339  Q
    |||||| ||| |||| |||||||||||||||||||  ||||||| ||||||| ||||    
T  31407341 tgtctaggttttttaacattattatgactactaaagtatatttggcatctagacttt 31407397  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 283 - 343
Target Start/End: Complemental strand, 6861223 - 6861163
Alignment:
Q  283 tgtctaagttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||||| |||||||| ||||||||||| |||||||||||||||| |||||||| |||||||    
T  6861223 tgtctaggttgtttagcattattatgattactaaataatatttggcatctaggttttgagt 6861163  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 26207590 - 26207646
Alignment:
Q  283 tgtctaagttgtttatcattattatgactactaaataatatttgacatctaggcttt 339  Q
    ||||||||||||||  ||||||||||||||||||   ||||||||||||||| ||||    
T  26207590 tgtctaagttgtttcgcattattatgactactaagacatatttgacatctagacttt 26207646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 156
Target Start/End: Complemental strand, 15806537 - 15806490
Alignment:
Q  109 aaaatcctagtaaaatcacacaaaatcgtgaaatacattcataatcgc 156  Q
    ||||||||||||||||| |||||||||||||||| ||| || ||||||    
T  15806537 aaaatcctagtaaaatcgcacaaaatcgtgaaatccatacaaaatcgc 15806490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 8566291 - 8566248
Alignment:
Q  299 cattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    ||||||||||||||||||| |||| ||| ||||||||||||||||    
T  8566291 cattattatgactactaaagaataattg-catctaggctttgagt 8566248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 39845310 - 39845256
Alignment:
Q  283 tgtctaagttgtttatcattattatgactactaaataatatttgacatctaggct 337  Q
    |||||| |||||||| ||||||||||||||||||| |||||||| ||||||||||    
T  39845310 tgtctaggttgtttagcattattatgactactaaagaatatttggcatctaggct 39845256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 24117544 - 24117594
Alignment:
Q  285 tctaagttgtttatcattattatgactactaaataatatttgacatctagg 335  Q
    |||| ||||||||||||||||||||| |||||| ||||||| |||||||||    
T  24117544 tctaggttgtttatcattattatgacaactaaagaatatttcacatctagg 24117594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 22789253 - 22789306
Alignment:
Q  290 gttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||||||| ||||||||||||||||| | | |||||||||| ||||||||||||    
T  22789253 gttgtttagcattattatgactactatagagtatttgacatataggctttgagt 22789306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 39845512 - 39845459
Alignment:
Q  220 tttgtcaattgatccggtttgtacccgtgatccggttctataaatacataaaaa 273  Q
    |||||||||||| ||||||||||| ||||| ||| ||||| |||||||||||||    
T  39845512 tttgtcaattgaaccggtttgtactcgtgaaccgcttctaaaaatacataaaaa 39845459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 343
Target Start/End: Complemental strand, 12003004 - 12002945
Alignment:
Q  283 tgtctaagttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||||| |||||||| ||||||||||||  ||||| |||||||| ||||||||||||||||    
T  12003004 tgtctaggttgtttagcattattatgaccgctaaagaatatttg-catctaggctttgagt 12002945  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 4631 - 4686
Alignment:
Q  109 aaaatcctagtaaaatcacacaaaatcgtgaaatacattcataatcgccgaatttt 164  Q
    ||||||||| |||||||||||||| ||||||||| | |||| |||||| |||||||    
T  4631 aaaatcctattaaaatcacacaaattcgtgaaatccgttcaaaatcgcagaatttt 4686  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 16434588 - 16434629
Alignment:
Q  300 attattatgactactaaataatatttgacatctaggctttga 341  Q
    ||||||| |||||||||| ||||||||||||||||| |||||    
T  16434588 attattacgactactaaagaatatttgacatctaggatttga 16434629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 8773014 - 8773050
Alignment:
Q  290 gttgtttatcattattatgactactaaataatatttg 326  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  8773014 gttgtttagcattattatgactactaaagaatatttg 8773050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 343
Target Start/End: Original strand, 7307054 - 7307106
Alignment:
Q  291 ttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||    
T  7307054 ttgtttagcattattatgactactaaagaatatttgtcatctagtctttgagt 7307106  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 4574729 - 4574806
Alignment:
Q  253 ggttctataaatacataaaaagccaagttctgtctaagttgtttatcattattatgactactaaataatatttgacatc 331  Q
    |||||||||||||||||||    |||||| |||||| |||| ||| |||||||| |||||||||| |||||||||||||    
T  4574729 ggttctataaatacataaaggagcaagtt-tgtctaggttgcttagcattattacgactactaaagaatatttgacatc 4574806  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 343
Target Start/End: Complemental strand, 1981417 - 1981358
Alignment:
Q  283 tgtctaagttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||||| ||| |||| ||| ||||||||||||||| |||||||| ||||||||||||||||    
T  1981417 tgtctaggttatttagcatcattatgactactaaagaatatttg-catctaggctttgagt 1981358  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 4574509 - 4574557
Alignment:
Q  51 aattttgcgattttactcaccttcaacgatt-taattcattgcagaatt 98  Q
    |||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  4574509 aattttgcgactttactcaccttcaacgattcaaattcattgcagaatt 4574557  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 8254339 - 8254293
Alignment:
Q  109 aaaatcctagtaaaatcacacaaaatcgtgaaatacattcataatcg 155  Q
    |||||||||  ||||||||||||||||||||||| |||||| |||||    
T  8254339 aaaatcctatcaaaatcacacaaaatcgtgaaatccattcaaaatcg 8254293  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 19377647 - 19377706
Alignment:
Q  283 tgtctaagttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||||| |||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||    
T  19377647 tgtctaggttgtttaacattattatgactactaaagaatatttg-catctagcctttgagt 19377706  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 187960 - 187907
Alignment:
Q  290 gttgtttatcattatta-tgactactaaataatatttgacatctaggctttgagt 343  Q
    |||||||| |||||||| ||||||||||| |||||||| ||||||||||||||||    
T  187960 gttgtttagcattattactgactactaaaaaatatttg-catctaggctttgagt 187907  T

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Target: scaffold1178 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 381 - 425
Alignment:
Q  283 tgtctaagttgtttatcattattatgactactaaataatatttga 327  Q
    |||||| |||||||| ||||||||||||||| ||| |||||||||    
T  381 tgtctaggttgtttaacattattatgactaccaaagaatatttga 425  T

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Target: scaffold0017 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 343
Target Start/End: Complemental strand, 128770 - 128711
Alignment:
Q  283 tgtctaagttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||||| |||||||| ||||||||||| || |||| |||||||| |||||||| |||||||    
T  128770 tgtctaggttgtttagcattattatgattagtaaagaatatttg-catctaggttttgagt 128711  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 26575502 - 26575454
Alignment:
Q  233 ccggtttgtacccgtgatccggttctataaatacataaaaagccaagtt 281  Q
    |||||||||| | |||| ||||||||||||||||||||||  |||||||    
T  26575502 ccggtttgtatcagtgacccggttctataaatacataaaataccaagtt 26575454  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 26879594 - 26879654
Alignment:
Q  283 tgtctaagttgtttatcattattatgactactaaataatatttgacatctaggctttgagt 343  Q
    |||||| |||||| | |||||||||||||| |||| |||||| | | ||||||||||||||    
T  26879594 tgtctaggttgttcaacattattatgactagtaaagaatattcggcttctaggctttgagt 26879654  T

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