View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_48 (Length: 364)
Name: NF2729_high_48
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 2226376 - 2226532
Alignment:
| Q |
18 |
acctagcgaacccgaaaccaccgattcgagctcgaaaatctgaatccaataacacattattgggtttgatatctctatggatgatacgcggctttgcttg |
117 |
Q |
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| T |
2226376 |
acctagcgaacccgaaaccactgattcgagctcagaaatctgaatccaataacacattattgggtttgatatctctatggatgatacgcggctttgcttg |
2226475 |
T |
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| Q |
118 |
gtgatgaagatatctgaaagtcgatgcaagcaaactcaaaaataagtgacacctaaaacag |
178 |
Q |
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| T |
2226476 |
gtgatgaagatatctgaaagtcgat----gcaaactcaaaaataagtgacacctaaaacag |
2226532 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 2226587 - 2226624
Alignment:
| Q |
233 |
ctaaaaagaatactaattagtcattaataataagtata |
270 |
Q |
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| T |
2226587 |
ctaaaaagaatactaattagtcattaataataagtata |
2226624 |
T |
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