View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_49 (Length: 363)
Name: NF2729_high_49
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2373434 - 2373390
Alignment:
| Q |
1 |
cgccataaaagggggtgtgcagggttagggttgagaagggtccaa |
45 |
Q |
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| T |
2373434 |
cgccataaaagggggtgtgcagggttagggttgagaagggtccaa |
2373390 |
T |
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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2382637 - 2382681
Alignment:
| Q |
1 |
cgccataaaagggggtgtgcagggttagggttgagaagggtccaa |
45 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2382637 |
cgccataaaagggggtgtgcagggttagggttgagaagggtccaa |
2382681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 1526390 - 1526432
Alignment:
| Q |
3 |
ccataaaagggggtgtgcagggttagggttgagaagggtccaa |
45 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1526390 |
ccataaaagggggtgtgcagggttagggttgagaagggtccaa |
1526432 |
T |
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