View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_51 (Length: 337)
Name: NF2729_high_51
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_51 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 53922249 - 53922011
Alignment:
| Q |
1 |
gaatgagagtttggtctgaggtctag--ttcgatcagtaaaacgaaaaaccatagaatgaacataattgtaagtgagaaacaaaagagacattgaaaaat |
98 |
Q |
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| T |
53922249 |
gaatgagagtttggtctgaggtctagagttcgatcagtaaaacgaaaaaccatagaatgaacataattgtaagtgagaaacaaaagagacattgaaaaat |
53922150 |
T |
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| Q |
99 |
gccgagtccatctactgattcacatttttatactgcctaaattattcaattattcatggagtaggtaattgttaattaagagtcatttaggttaaatggt |
198 |
Q |
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| T |
53922149 |
gccgagtacatctactgattcacatttttatactgcctaaattattcaattattcatggagtaggtaattgttaattaagagtcatttaggttaaatggt |
53922050 |
T |
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| Q |
199 |
taatcgatacatgttgctatttgactcaaaaatgtgatt |
237 |
Q |
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| T |
53922049 |
taatcgatatatgttgctatttgactcaaaaatgtgatt |
53922011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 53921981 - 53921897
Alignment:
| Q |
238 |
tggcatgcagtgagtatggtgtttttt--gaggaaaatcgtgacacgatttttgatatgtttgccacgttttcaggataaggttg |
320 |
Q |
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| T |
53921981 |
tggcatgcaatgagtatggtgtttttttggaggaaaatcgtgacacgatttttaatatgtttgacaagttttcaggataaggttg |
53921897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 21272593 - 21272642
Alignment:
| Q |
271 |
aatcgtgacacgatttttgatatgtttgccacgttttcaggataaggttg |
320 |
Q |
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| T |
21272593 |
aatcgtgtcacgatttttgacatgtttggcacgttttcaggataaggttg |
21272642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 16455354 - 16455399
Alignment:
| Q |
271 |
aatcgtgacacgatttttgatatgtttgccacgttttcaggataag |
316 |
Q |
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| T |
16455354 |
aatcgtgacatgatttttggtatgtttggcacgttttcaggataag |
16455399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 3051610 - 3051565
Alignment:
| Q |
275 |
gtgacacgatttttgatatgtttgccacgttttcaggataaggttg |
320 |
Q |
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| T |
3051610 |
gtgacacgatttttggcatgtttgacacgttttcaagataaggttg |
3051565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 6570301 - 6570350
Alignment:
| Q |
271 |
aatcgtgacacgatttttgatatgtttgccacgttttcaggataaggttg |
320 |
Q |
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| T |
6570301 |
aatcgtgacacgatttttggcatgcttgacacgtttttaggataaggttg |
6570350 |
T |
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