View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_55 (Length: 328)
Name: NF2729_high_55
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_55 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 185 - 314
Target Start/End: Complemental strand, 34506752 - 34506609
Alignment:
| Q |
185 |
gatccaagatggtcttcagtcaaaaagaaatcaaaagtccaagatggacattaattgaaatcaatgtgtttcattcacac--------------ttattt |
270 |
Q |
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| T |
34506752 |
gatccaagatggtcttcagtcaaaaagaaatcaaaagtccaagatggacattaattgaaatcaatgtgtttcattcacacttacaacttactttttattt |
34506653 |
T |
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| Q |
271 |
atctgtacattgaataaaattcaattgagtaaactatacttatc |
314 |
Q |
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| T |
34506652 |
atctgtacattgaataaaattcaattcagtaaactatgcttatc |
34506609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 34506934 - 34506817
Alignment:
| Q |
8 |
cgaagaaaattgtcgccataaacagtatccccttttataaaatttgaattgaattataaaatagtctcaattatatatatgtac-----acacacatata |
102 |
Q |
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|||| ||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34506934 |
cgaaaaaaattgtcgccataaatagcatcctcttttataaaatttgaattgaattataaaatagtctcaattatatatatgtacctagtacacacatata |
34506835 |
T |
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| Q |
103 |
tcttgaatatcttgagca |
120 |
Q |
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| T |
34506834 |
tcttgaatatcttgagca |
34506817 |
T |
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