View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2729_high_56 (Length: 328)
Name: NF2729_high_56
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_56 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 40426814 - 40426517
Alignment:
| Q |
17 |
gaagggaaaagcttagccagagattcattgctctttcatctcttcttcctggactcaaaaaggtactatatatattctaatgaatctcatgcacataaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40426814 |
gaagggaaaagcttagccagagattcatttctctttcatctcttcttcctggactcaaaaaggtactatatatattctaatgaatctcatgcacataaat |
40426715 |
T |
|
| Q |
117 |
atgcatggttgcgttgcatttgtctgaaaccgcaattgaaaaccatg--atatcctctatcaagtatatacaaatattatttaacattaatcaatgttta |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40426714 |
atgcatggttgcgttgcatttgtctgaaaccgcaattgaaaaccatgatatatcctctatcaagtatatacaaatattatttaacattaatcaatgttta |
40426615 |
T |
|
| Q |
215 |
ctttgcatgcagatggacaaggcaactattttggaagatgctataaaacatcttaagcaactaaatgaaagagtgaagactttggaggaacatgtagc |
312 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40426614 |
ctttgcatccagatggacaaggcaactattttggaagatgctataaaacatcttaagcaactaaacgaaagagtgaagactttggaggaacatgtagc |
40426517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 40441694 - 40441582
Alignment:
| Q |
200 |
attaatcaatgtttactttgcatgcagatggacaaggcaactattttggaagatgctataaaacatcttaagcaactaaatgaaagagtgaagactttgg |
299 |
Q |
| |
|
||||| ||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||| | |||||||| |||||||| | |
|
|
| T |
40441694 |
attaaccaaagttcactttgcatgcagatggacaaggcaactattttagaagatgctataaaacatatgaagcaactacaggaaagagtaaagactttag |
40441595 |
T |
|
| Q |
300 |
aggaacatgtagc |
312 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
40441594 |
aggaacaagtagc |
40441582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 40441902 - 40441828
Alignment:
| Q |
17 |
gaagggaaaagcttagccagagattcattgctctttcatctcttcttcctggactcaaaaaggtactatatatat |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40441902 |
gaagggaaaagcttagccagagattcattgcactttcctctattcttcctggactcaaaaaggtactatatatat |
40441828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University