View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_57 (Length: 313)
Name: NF2729_high_57
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_57 |
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Alignment Details
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 227 - 305
Target Start/End: Original strand, 50247709 - 50247787
Alignment:
| Q |
227 |
gtgtgaaggatgttttatatagtcaatagacattatactttattgacttgaggccgacaaacattacctatgctactcc |
305 |
Q |
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| T |
50247709 |
gtgtgtaggatgttttatatagtcactagacattatactttattgacttgaggccgacaaacattacttatgcttctcc |
50247787 |
T |
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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 50247673 - 50247637
Alignment:
| Q |
241 |
ttatatagtcaatagacattatactttattgacttga |
277 |
Q |
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| T |
50247673 |
ttatatagtcactagacattatactttattgacttga |
50247637 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 21546088 - 21546021
Alignment:
| Q |
89 |
ggagaagcagccacaaataagtatgggtgttattttt-ggttgattagaacatgattaaatgaatatt |
155 |
Q |
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| T |
21546088 |
ggagaagtagccacaaatatgtatgagtactattttttggttgattataacatgattaaatgaatatt |
21546021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 276
Target Start/End: Original strand, 7498691 - 7498763
Alignment:
| Q |
204 |
gaggcttattttaattttgcttcgtgtgaaggatgttttatatagtcaatagacattatactttattgacttg |
276 |
Q |
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| T |
7498691 |
gaggcttatttagattttactatgtgtgtaggatgttttataaagccaatagaccttatgctttattgacttg |
7498763 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 46885285 - 46885336
Alignment:
| Q |
102 |
caaataagtatgggtgttatttt-tggttgattagaacatgattaaatgaat |
152 |
Q |
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| T |
46885285 |
caaataagtatgggtattattttttggttgattataacatgattaaatgaat |
46885336 |
T |
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