View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2729_high_67 (Length: 296)

Name: NF2729_high_67
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2729_high_67
NF2729_high_67
[»] chr5 (5 HSPs)
chr5 (14-176)||(25379547-25379712)
chr5 (14-176)||(25482824-25482989)
chr5 (203-278)||(25379739-25379814)
chr5 (207-278)||(25483023-25483094)
chr5 (205-266)||(17515274-17515335)
[»] chr1 (6 HSPs)
chr1 (28-176)||(28247447-28247602)
chr1 (28-176)||(11471438-11471603)
chr1 (38-176)||(50027316-50027459)
chr1 (203-278)||(11471631-11471706)
chr1 (203-278)||(28247343-28247418)
chr1 (203-278)||(50027215-50027289)
[»] chr6 (4 HSPs)
chr6 (14-176)||(19310136-19310307)
chr6 (28-176)||(10126345-10126506)
chr6 (203-278)||(19310034-19310109)
chr6 (203-278)||(10126243-10126317)
[»] chr2 (4 HSPs)
chr2 (28-176)||(38255263-38255424)
chr2 (203-278)||(38255160-38255235)
chr2 (203-278)||(43154308-43154383)
chr2 (102-176)||(43154203-43154280)
[»] chr7 (3 HSPs)
chr7 (22-148)||(22492235-22492367)
chr7 (203-276)||(22492125-22492198)
chr7 (205-266)||(37163106-37163167)
[»] chr4 (3 HSPs)
chr4 (68-141)||(48792964-48793034)
chr4 (203-278)||(48793106-48793179)
chr4 (205-278)||(26283571-26283644)


Alignment Details
Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 25379547 - 25379712
Alignment:
Q  14 agaacacatgactgagagaaggagtgaaatagaaaacgcgcgctaacccttctgcttcccccttccacttcaaaacaaactcactcaccatcatcatcat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  25379547 agaacacatgactgagagaaggagtgaaatagaaaacgcgcgctaacccttctgcttcctccttccacttcaaaacaagctcactcaccatcatcatcat 25379646  T
Q  114 cagttttccgtccaccgtcgatcaccgccgccgc---caacctgccatgactgtggcatcataagg 176  Q
     ||||||||||||||||||||||| |||||||||   ||||||||||||||| |||||||||||||    
T  25379647 gagttttccgtccaccgtcgatcatcgccgccgctgtcaacctgccatgactatggcatcataagg 25379712  T

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Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 176
Target Start/End: Original strand, 25482824 - 25482989
Alignment:
Q  14 agaacacatgactgagagaaggagtgaaatagaaaacgcgcgctaacccttctgcttcccccttccacttcaaaacaaactcactcaccatcatcatcat 113  Q
    ||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||    
T  25482824 agaacacgtgactaagagaacgagtgaaatagaaaacgcgcgctaacccttctgcttcctccttccacttcaaaacaaactccctcgccatcatcatcat 25482923  T
Q  114 cagttttccgtccaccgtcgatcaccgccgccgc---caacctgccatgactgtggcatcataagg 176  Q
    |||||||| |||||||||||||||||||||||||   ||||||||||||| |||||||||||||||    
T  25482924 cagttttctgtccaccgtcgatcaccgccgccgccatcaacctgccatgaatgtggcatcataagg 25482989  T

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Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 25379739 - 25379814
Alignment:
Q  203 agaatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25379739 agaatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 25379814  T

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Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 25483023 - 25483094
Alignment:
Q  207 tgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25483023 tgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttttatgaaaatagagaataac 25483094  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 17515335 - 17515274
Alignment:
Q  205 aatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaa 266  Q
    ||||||||||||| |||||  |||||||  || |||||||| ||||||||||||| ||||||    
T  17515335 aatgattgaaatgctcatatgaatgagaacaaaccataatagaaatcaaaatttcaatgaaa 17515274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 28247602 - 28247447
Alignment:
Q  28 agagaaggagtgaaatagaaaacgcgcgctaacccttctgcttcccccttccacttcaaaacaaactcac----tcaccatcatcatcatcagttttccg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  28247602 agagaaggagtgaaatagaaaacgcgcgctaacccttctgcttcctccttccacttcaaaacaaactcactcactcaccatcatcatcatcagttttccg 28247503  T
Q  124 tccaccgtcgatcaccgccgccgc---caacctgccatgactgtggcatcataagg 176  Q
    ||||||||||||||||||||||||   |||||| ||||||||||||||||||||||    
T  28247502 tccaccgtcgatcaccgccgccgccgtcaacctaccatgactgtggcatcataagg 28247447  T

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Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 11471438 - 11471603
Alignment:
Q  28 agagaaggagtgaaatagaaaacgcgcgctaacccttctgcttcccccttccacttcaaaacaaactcactcac--------------catcatcatcat 113  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||              ||||||||||||    
T  11471438 agagaaggagtgaaatagaaaacgcgcgctaactcttctgcttcctccttccacttcaaaacaaactcactcactcactcaccatcatcatcatcatcat 11471537  T
Q  114 cagttttccgtccaccgtcgatcaccgccgccgc---caacctgccatgactgtggcatcataagg 176  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  11471538 cagttttccgtccaccgtcgatcaccgccgccgccgtcaacctgccatgactgtggcatcataagg 11471603  T

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Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 50027459 - 50027316
Alignment:
Q  38 tgaaatagaaaacgcgcgct--aacccttctgcttcccccttccacttcaaaacaaactcactcaccatcatcatcatcagttttccgtccaccgtcgat 135  Q
    |||||||||||||||||||   ||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  50027459 tgaaatagaaaacgcgcgcgccaacccttttgcttccaccttccacttcaaaacaaactcactcaccataatcatcatcagttttccgtccaccgtcggt 50027360  T
Q  136 caccgccgccgc---caacctgccatgactgtggcatcataagg 176  Q
    ||||||||||||   ||| ||||||||| |||| ||||||||||    
T  50027359 caccgccgccgccgtcaagctgccatgaatgtgtcatcataagg 50027316  T

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Target: chr1; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 11471631 - 11471706
Alignment:
Q  203 agaatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 278  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11471631 agaatgattgaaatattcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 11471706  T

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Target: chr1; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 28247418 - 28247343
Alignment:
Q  203 agaatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 278  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28247418 agaatgattgaaatgttcatagaaatgagattaacccgtaataaaaatcaaaatttctatgaaaatagagaataac 28247343  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 50027289 - 50027215
Alignment:
Q  203 agaatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 278  Q
    ||||||||||| ||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||    
T  50027289 agaatgattgatatggtcatagaaatgagattaacccaaaat-aaaatcaaaatttatatgaaaatagagaataac 50027215  T

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Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 19310307 - 19310136
Alignment:
Q  14 agaacacatgactgagagaaggagtgaaatagaaaacgcgcgctaacccttctgcttcccccttccacttcaaaacaaactcactcaccatcatcatc-- 111  Q
    ||||||| |||||||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||      
T  19310307 agaacacgtgactgagagaaggagtgaaatggaaaatgtgcgctaacccttctgcttcctccttccacttcaaaacaaactcactcaccatcatcatcat 19310208  T
Q  112 ----atcagttttccgtccaccgtcgatcaccgccgccgc---caacctgccatgactgtggcatcataagg 176  Q
        ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  19310207 catcatcagttttccgtccaccgtcgatcaccgccgccgccgtcaacctgccatgactgtggcatcataagg 19310136  T

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Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 10126506 - 10126345
Alignment:
Q  28 agagaaggagtgaaatagaaaacgcgcgctaacccttctgcttcccccttccacttcaaaacaaactcactcac----------catcatcatcatcagt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||          ||||||||||||||||    
T  10126506 agagaaggagtgaaatagaaaacgcgcgctaacccttctgcttcctccttccactttaaaacaaactcactcactcaccatcatcatcatcatcatcagt 10126407  T
Q  118 tttccgtccaccgtcgatcaccgccgccgc---caacctgccatgactgtggcatcataagg 176  Q
    |||||||||||||| |||||||||||||||   ||||||||||||| |||||||||||||||    
T  10126406 tttccgtccaccgttgatcaccgccgccgccgtcaacctgccatgattgtggcatcataagg 10126345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 19310109 - 19310034
Alignment:
Q  203 agaatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 278  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19310109 agaatgattgaaatgatcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 19310034  T

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Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 10126317 - 10126243
Alignment:
Q  203 agaatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 278  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10126317 agaatgattgaaatgtt-atagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 10126243  T

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Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 38255424 - 38255263
Alignment:
Q  28 agagaaggagtgaaatagaaaacgcgcgctaacccttctgcttcccccttccacttcaaaacaaactcactcac----------catcatcatcatcagt 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||          ||||||||||||||||    
T  38255424 agagaaggagtgaaatagaaaacgcgcgctaactcttctgcttcctccttccacttcaaaacaaactcactcactcaccatcatcatcatcatcatcagt 38255325  T
Q  118 tttccgtccaccgtcgatcaccgccgccgc---caacctgccatgactgtggcatcataagg 176  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  38255324 tttccgtccaccgtcgatcaccgccgccgccgtcaacctgccatgactgtggcatcataagg 38255263  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 203 - 278
Target Start/End: Complemental strand, 38255235 - 38255160
Alignment:
Q  203 agaatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38255235 agaatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 38255160  T

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Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 43154308 - 43154383
Alignment:
Q  203 agaatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43154308 agaatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 43154383  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 176
Target Start/End: Original strand, 43154203 - 43154280
Alignment:
Q  102 catcatcatcatcagttttccgtccaccgtcgatcaccg---ccgccgccaacctgccatgactgtggcatcataagg 176  Q
    |||||||||||||||||| ||||||||||||||||||||   |||||| |||||||||||||||||||||||||||||    
T  43154203 catcatcatcatcagtttaccgtccaccgtcgatcaccgccaccgccgtcaacctgccatgactgtggcatcataagg 43154280  T

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Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 22492367 - 22492235
Alignment:
Q  22 tgactgagagaaggagtgaaatagaaaacgcgcgctaacccttctgcttcccccttccacttcaaaacaaactcactcaccat------catcatcatca 115  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||      |||||||||||    
T  22492367 tgactgagagaacgagtgaaatagaaaacgcgcgttaacccttctgcttcctccttccacttcaaaacaaactcactcaccatcatcctcatcatcatca 22492268  T
Q  116 gttttccgtccaccgtcgatcaccgccgccgcc 148  Q
    |||||||||||||||||||||||| ||||||||    
T  22492267 gttttccgtccaccgtcgatcaccaccgccgcc 22492235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 203 - 276
Target Start/End: Complemental strand, 22492198 - 22492125
Alignment:
Q  203 agaatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaata 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22492198 agaatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaata 22492125  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 37163106 - 37163167
Alignment:
Q  205 aatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaa 266  Q
    ||||||||||||| |||||  |||||||  || |||||||| ||||||||||||| ||||||    
T  37163106 aatgattgaaatgctcatatgaatgagaacaaaccataatagaaatcaaaatttcaatgaaa 37163167  T

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Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 48792964 - 48793034
Alignment:
Q  68 cttcccccttccacttcaaaacaaactcactcaccatcatcatcatcagttttccgtccaccgtcgatcaccgc 141  Q
    ||||| ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||    
T  48792964 cttcctccttccacttcaaaacaaactcactcac---catcatcatcagttttccgtccaccgtcgatcgccgc 48793034  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 203 - 278
Target Start/End: Original strand, 48793106 - 48793179
Alignment:
Q  203 agaatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 278  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||    
T  48793106 agaatgattgaa-tgttcatagaaatgagattaacccataa-aaaaaacaaattttctatgaaaatagagaataac 48793179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 26283644 - 26283571
Alignment:
Q  205 aatgattgaaatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataac 278  Q
    ||||||||||||| |||||| |||||||| || |||| || ||||| |||||||  |  |||||||||||||||    
T  26283644 aatgattgaaatgctcataggaatgagatcaaaccatgattaaaattaaaatttaaacaaaaatagagaataac 26283571  T

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