View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_7 (Length: 693)
Name: NF2729_high_7
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 7 - 486
Target Start/End: Original strand, 11589082 - 11589555
Alignment:
| Q |
7 |
tcgaagaatatagctagagatcaagaatagagattttttggagcaatcatgggccatattcctcaggatgaagttgagcaaaaattatttgaggccttgg |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
11589082 |
tcgaagaaagtagctagagatcaagaatagagattttttggagcaatcatgggccatattcttgaggatgaagttgagcaaaaattatttgaggccttgg |
11589181 |
T |
|
| Q |
107 |
aaaatggaaattgataatctaattattatagaaattcctgctaatgctgatgattttcaagttgtgaacatatcagaaggtgagaataaagggaagaaaa |
206 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
11589182 |
aaaatggaaattgataatctaattatcatagaaattcctgctaatgctgatgattttcaaattgtgaacatttcagaaggtgagaataaagggaagaaaa |
11589281 |
T |
|
| Q |
207 |
cttcacatcttaaaagtaattatagaactataggaaaaacttgtcatcctaaaccctttagatgatgattatttattgaaacataacgggtttggccaat |
306 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11589282 |
cttcacatctta-------ttatagaactataggaaaaacttgtcatcctaaactttttagatgatgattatttattgaaacataaagggtttggccaat |
11589374 |
T |
|
| Q |
307 |
ttgttgtcaagattggatcataaaagataaattcttactaataaatcc-gaatttgttttatttgttgaactatggatggattctaaagattctccctta |
405 |
Q |
| |
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|| ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11589375 |
ttattgtcaagattggatcataaaagattaattcttactaaaaaaacccgaatttgttttatttgctgaactatggatggattctaaagattctccctta |
11589474 |
T |
|
| Q |
406 |
aactgactcaataaaatatgtcctaagctattttcctttaatgctatacaaaacctttcacaatatttatggagcacttgt |
486 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11589475 |
aactgactcaatataatatgtcctaagctattttcctttaatgctatacaaaacgtttcacaatatttatggagcacttgt |
11589555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 7 - 486
Target Start/End: Original strand, 11601667 - 11602140
Alignment:
| Q |
7 |
tcgaagaatatagctagagatcaagaatagagattttttggagcaatcatgggccatattcctcaggatgaagttgagcaaaaattatttgaggccttgg |
106 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
11601667 |
tcgaagaaagtagctagagatcaagaatagagattttttggagcaatcatgggccatattcttgaggatgaagttgagcaaaaattatttgaggccttgg |
11601766 |
T |
|
| Q |
107 |
aaaatggaaattgataatctaattattatagaaattcctgctaatgctgatgattttcaagttgtgaacatatcagaaggtgagaataaagggaagaaaa |
206 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
11601767 |
aaaatggaaattgataatctaattatcatagaaattcctgctaatgctgatgattttcaaattgtgaacatttcagaaggtgagaataaagggaagaaaa |
11601866 |
T |
|
| Q |
207 |
cttcacatcttaaaagtaattatagaactataggaaaaacttgtcatcctaaaccctttagatgatgattatttattgaaacataacgggtttggccaat |
306 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11601867 |
cttcacatctta-------ttatagaactataggaaaaacttgtcatcctaaactttttagatgatgattatttattgaaacataaagggtttggccaat |
11601959 |
T |
|
| Q |
307 |
ttgttgtcaagattggatcataaaagataaattcttactaataaatcc-gaatttgttttatttgttgaactatggatggattctaaagattctccctta |
405 |
Q |
| |
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|| ||||||||||||||||||||||||| |||||||||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11601960 |
ttattgtcaagattggatcataaaagattaattcttactaaaaaaacccgaatttgttttatttgctgaactatggatggattctaaagattctccctta |
11602059 |
T |
|
| Q |
406 |
aactgactcaataaaatatgtcctaagctattttcctttaatgctatacaaaacctttcacaatatttatggagcacttgt |
486 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11602060 |
aactgactcaatataatatgtcctaagctattttcctttaatgctatacaaaacgtttcacaatatttatggagcacttgt |
11602140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 680
Target Start/End: Complemental strand, 18145034 - 18144985
Alignment:
| Q |
631 |
gaagaagacacaaacaacaatccgaacattaagcgagacatgaaactatg |
680 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||| ||||||| ||||||| |
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| T |
18145034 |
gaagaagacacacacaacaatccgaacattcagcaagacatggaactatg |
18144985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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