View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_70 (Length: 288)
Name: NF2729_high_70
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_70 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 49987055 - 49986913
Alignment:
| Q |
14 |
ttgcattcataaacacttgacccccatttaatgcaaaaaagctcagcatgacggggagatggagtaaaaagctctttaaaaacatcagttgcaatagctc |
113 |
Q |
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| T |
49987055 |
ttgcattcataaacacttgacccccatttaatgcaaaaaagcttagcatgacggggagatggagtaaaaagctctttaaaaacatcagttgcaatagctc |
49986956 |
T |
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| Q |
114 |
taagaatgggaaaatgctttatattcagcacttaattaataaa |
156 |
Q |
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| T |
49986955 |
taagaatgggaaaatgctttatattcagcaattaattaataaa |
49986913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 49986526 - 49986424
Alignment:
| Q |
153 |
taaatagtataagttggaaggccccaaaaacacaaattaaacacatacacacacgatagtgccaacacaccacttcttaggtgtatgaaagtgaaagtat |
252 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49986526 |
taaatagtataagttggaaggccccaaaaacataaattaaacacatacacacacaatagtgccaacacaccacttcttaggtgtatgaaagtgaaagtat |
49986427 |
T |
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| Q |
253 |
atg |
255 |
Q |
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||| |
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| T |
49986426 |
atg |
49986424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 42302796 - 42303007
Alignment:
| Q |
1 |
tggtgactttcacttgcattcataaacacttgacccccatttaatgcaaaaaagctcagcatgacggggagatggagtaaaaagctctttaaaaacatca |
100 |
Q |
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| T |
42302796 |
tggtgacttccgcttgcattcataaacacttcaaccccatttaatgcaa----gctcagcatgagggggagatggagtaaaaagttcttcacaaacttcc |
42302891 |
T |
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| Q |
101 |
gttgcaatagctctaagaatgggaaaatgctttatattcagcacttaattaataaa-----tagtataagttggaaggccccaaaaacacaaattaaaca |
195 |
Q |
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| T |
42302892 |
actgcaatagctctaagaatgggaaaatgctttatgttaagcacataa-taataaacatctgagtataagttggaaagccccaaaaacataaatgaaaca |
42302990 |
T |
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| Q |
196 |
catacacacacgatagt |
212 |
Q |
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||||||||||| ||||| |
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| T |
42302991 |
catacacacacaatagt |
42303007 |
T |
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