View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2729_high_71 (Length: 287)

Name: NF2729_high_71
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2729_high_71
NF2729_high_71
[»] chr7 (4 HSPs)
chr7 (17-274)||(22114677-22114928)
chr7 (17-274)||(40509247-40509498)
chr7 (17-201)||(4299591-4299775)
chr7 (47-141)||(43314458-43314553)
[»] chr4 (5 HSPs)
chr4 (17-201)||(49343013-49343197)
chr4 (17-184)||(45535989-45536156)
chr4 (17-201)||(42809236-42809420)
chr4 (17-184)||(23103016-23103183)
chr4 (47-141)||(34742778-34742872)
[»] chr1 (3 HSPs)
chr1 (17-200)||(14471250-14471433)
chr1 (17-182)||(27557210-27557375)
chr1 (17-201)||(41873480-41873664)
[»] chr3 (3 HSPs)
chr3 (17-184)||(44602081-44602247)
chr3 (47-141)||(35166549-35166643)
chr3 (47-141)||(21530588-21530683)
[»] scaffold0201 (1 HSPs)
scaffold0201 (17-155)||(21603-21741)
[»] chr8 (1 HSPs)
chr8 (47-141)||(17594430-17594524)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 22114677 - 22114928
Alignment:
Q  17 agtatggtggctggaaaagcccctttccgtggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccc 116  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  22114677 agtatggtggccggaaaagccccttcccgtggcggaggaagaaaaaggtcggctaaaaagttgttcctttcgtgaaattagttggaccaatggaaaaccc 22114776  T
Q  117 tagtcaagaggataaagaaaatggtcttactttttccgatcggtgcacgtggtcggcagagcgacgccaggatggggcggcgacgatggagagcagaaga 216  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||    
T  22114777 tagtcgagaggataaagaaaatggtcttattttttccgatcggtgcacgtggtcggcagagcgacgtcgtgatggggcggcgacggtggagagcagaaga 22114876  T
Q  217 aggaaatcnnnnnnnnnncttcttcttttgacaaaagaagaaggaaatttgtgaacct 274  Q
    ||||||||           || |||||||||||||||||||||||||| |||||||||    
T  22114877 aggaaatcttttt------tttttcttttgacaaaagaagaaggaaatctgtgaacct 22114928  T

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Target: chr7; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 40509247 - 40509498
Alignment:
Q  17 agtatggtggctggaaaagcccctttccgtggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccc 116  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  40509247 agtatggtggccggaaaagccccttcccgtggcggaggaagaaaaaggtcggctaaaaagttgttcctttcgtgaaattagttggaccaatggaaaaccc 40509346  T
Q  117 tagtcaagaggataaagaaaatggtcttactttttccgatcggtgcacgtggtcggcagagcgacgccaggatggggcggcgacgatggagagcagaaga 216  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||    
T  40509347 tagtcgagaggataaagaaaatggtcttattttttccgatcggtgcacgtggtcggcagagcgacgtcgtgatggggcggcgacggtggagagcagaaga 40509446  T
Q  217 aggaaatcnnnnnnnnnncttcttcttttgacaaaagaagaaggaaatttgtgaacct 274  Q
    ||||||||           || |||||||||||||||||||||||||| |||||||||    
T  40509447 aggaaatcttttt------tttttcttttgacaaaagaagaaggaaatctgtgaacct 40509498  T

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Target: chr7; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 4299591 - 4299775
Alignment:
Q  17 agtatggtggctggaaaagcccctttccgtggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccc 116  Q
    ||||||||||| ||||||||||||| | | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4299591 agtatggtggccggaaaagccccttccggcggcggaggaagaaaagggttggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccc 4299690  T
Q  117 tagtcaagaggataaagaaaatggtcttactttttccgatcggtgcacgtggtcggcagagcgacgccaggatggggcggcgacg 201  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  4299691 tagtcgagaggataaagaaaatggtcttacttattccgatcggtgcacgtggtcggcagagcgacgccggggtggggcggcgacg 4299775  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 43314458 - 43314553
Alignment:
Q  47 ggcggaggaagaaaa-gggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccctagtcaagaggataaagaaaatggt 141  Q
    ||||||||||||||| |||||  |  |||||||| ||||||||||||| || ||||||||| ||||||| || ||| || ||| ||||||||||||    
T  43314458 ggcggaggaagaaaaagggtcaacagaaaagttgctcctttcgtgaaactaattggaccaacggaaagctctcgtcgagtggaaaaagaaaatggt 43314553  T

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Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 49343197 - 49343013
Alignment:
Q  17 agtatggtggctggaaaagcccctttccgtggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccc 116  Q
    ||||||||||| ||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49343197 agtatggtggccggaaaagccccttccggcggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccc 49343098  T
Q  117 tagtcaagaggataaagaaaatggtcttactttttccgatcggtgcacgtggtcggcagagcgacgccaggatggggcggcgacg 201  Q
     |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  49343097 aagtcgagaggataaagaaaatggtcttactttttccgatcggtgcatgtggtcggcagagcgacgccgggatggggcggcgacg 49343013  T

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Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 45535989 - 45536156
Alignment:
Q  17 agtatggtggctggaaaagcccctttccgtggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccc 116  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| | ||||||||||||||||||| |||||| |||||||||||||||||||    
T  45535989 agtatggtggccggaaaagccccttaccgcggcggaggaagaaaagggtcgaccaaaaagttgttcctttcgtaaaattaattggaccaatggaaagccc 45536088  T
Q  117 tagtcaagaggataaagaaaatggtcttactttttccgatcggtgcacgtggtcggcagagcgacgcc 184  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||    
T  45536089 tcgtcgagaggataaagaaaatggtcttactttttccgatcggtgcacgtggtggtcaaagcgacgcc 45536156  T

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Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 42809420 - 42809236
Alignment:
Q  17 agtatggtggctggaaaagcccctttccgtggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccc 116  Q
    ||||||||||| ||||||||||||| ||| |||||||||| |||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||    
T  42809420 agtatggtggccggaaaagccccttcccgcggcggaggaaaaaaagggtcgacggaaaagttgttcctttcatgaaattagttggaccaatggaaagccc 42809321  T
Q  117 tagtcaagaggataaagaaaatggtcttactttttccgatcggtgcacgtggtcggcagagcgacgccaggatggggcggcgacg 201  Q
    | ||| ||||||||||||||||||||||||||||||||| |||||||| |||| | ||| ||||||||  || ||||||||||||    
T  42809320 tcgtcgagaggataaagaaaatggtcttactttttccgaacggtgcacatggtggacagtgcgacgccgagaaggggcggcgacg 42809236  T

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Target: chr4; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 23103183 - 23103016
Alignment:
Q  17 agtatggtggctggaaaagcccctttccgtggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccc 116  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||| | |||||| ||||||||||||||||||| |||||||||||||||||||    
T  23103183 agtatggtggccggaaaagccccttaccgcggcggaggaagaaaagggtcgaccaaaaagctgttcctttcgtgaaattaattggaccaatggaaagccc 23103084  T
Q  117 tagtcaagaggataaagaaaatggtcttactttttccgatcggtgcacgtggtcggcagagcgacgcc 184  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||| ||||| | || |||||||||    
T  23103083 tcgtcgagaggataaagaaaatggtcttactttttccgatcggtgcatgtggtggtcaaagcgacgcc 23103016  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 34742872 - 34742778
Alignment:
Q  47 ggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccctagtcaagaggataaagaaaatggt 141  Q
    ||||||||||||||||||||  |  |||||||| ||||||||||||| || ||||||||| ||||||| || ||| || ||| ||||||||||||    
T  34742872 ggcggaggaagaaaagggtcaacagaaaagttgctcctttcgtgaaactaattggaccaacggaaagctctcgtcgagtggaaaaagaaaatggt 34742778  T

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Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 14471433 - 14471250
Alignment:
Q  17 agtatggtggctggaaaagcccctttccgtggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccc 116  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14471433 agtatggtggccggaaaagccccttcccgcggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccc 14471334  T
Q  117 tagtcaagaggataaagaaaatggtcttactttttccgatcggtgcacgtggtcggcagagcgacgccaggatggggcggcgac 200  Q
    ||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | |||||||||||||    
T  14471333 tagacgagaggataaagaaaatggtcttactttttccgatcagtgcacgtggtcggcagagcgactccggaatggggcggcgac 14471250  T

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Target: chr1; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 27557210 - 27557375
Alignment:
Q  17 agtatggtggctggaaaagcccctttccgtggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccc 116  Q
    ||||||||||||||||||||||||| ||||||| || |||||||||||||| | |||||| ||||||||||||||||||| |||||||||||||||||||    
T  27557210 agtatggtggctggaaaagccccttaccgtggcagacgaagaaaagggtcgaccaaaaagctgttcctttcgtgaaattaattggaccaatggaaagccc 27557309  T
Q  117 tagtcaagaggataaagaaaatggtcttactttttccgatcggtgcacgtggtcggcagagcgacg 182  Q
    | ||| ||||||||||||||||||||||||||||| ||||||||||||||||| | || |||||||    
T  27557310 tcgtcgagaggataaagaaaatggtcttacttttttcgatcggtgcacgtggtggtcaaagcgacg 27557375  T

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Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 41873480 - 41873664
Alignment:
Q  17 agtatggtggctggaaaagcccctttccgtggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccc 116  Q
    ||||||||||| ||||||||||| | ||| |||||||||| |||||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||    
T  41873480 agtatggtggccggaaaagccccatcccgcggcggaggaaaaaaagggtcgacggaaaaattgttcctttcatgaaattagttggaccaatggaaagccc 41873579  T
Q  117 tagtcaagaggataaagaaaatggtcttactttttccgatcggtgcacgtggtcggcagagcgacgccaggatggggcggcgacg 201  Q
    | ||| |||| |||||||| ||||||||||||||||||| |||||||| |||| | ||| ||||||||  || ||||||||||||    
T  41873580 tcgtcgagagaataaagaatatggtcttactttttccgaacggtgcacatggtggacagtgcgacgccgagaaggggcggcgacg 41873664  T

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Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 44602247 - 44602081
Alignment:
Q  17 agtatggtggctggaaaagcccctttccgtggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccc 116  Q
    ||||||||||| ||||| ||||||| ||| ||||||||||||||||||||| | ||||||  |||||||| ||||||||| |||||||||||||||||||    
T  44602247 agtatggtggccggaaa-gccccttaccgcggcggaggaagaaaagggtcgaccaaaaagccgttccttttgtgaaattaattggaccaatggaaagccc 44602149  T
Q  117 tagtcaagaggataaagaaaatggtcttactttttccgatcggtgcacgtggtcggcagagcgacgcc 184  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||    
T  44602148 tcgtcgagaggataaagaaaatggtcttactttttccgatcggtgcacgtggtggtcaaagcgacgcc 44602081  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 35166643 - 35166549
Alignment:
Q  47 ggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccctagtcaagaggataaagaaaatggt 141  Q
    ||||||||||||||||||||  |  |||||||| |||||||||||||||| ||||||||| ||||||| ||  || || ||| ||||||||||||    
T  35166643 ggcggaggaagaaaagggtcaacagaaaagttgctcctttcgtgaaattaattggaccaacggaaagctctcatcgagtggaaaaagaaaatggt 35166549  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 21530683 - 21530588
Alignment:
Q  47 ggcggaggaagaaaa-gggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccctagtcaagaggataaagaaaatggt 141  Q
    ||||||||||||||| |||||  |  |||||||| ||||||||||||| || ||||||||| ||||||| || ||| || ||| ||||||||||||    
T  21530683 ggcggaggaagaaaaagggtcaacagaaaagttgctcctttcgtgaaactaattggaccaacggaaagctctcgtcgagtggaaaaagaaaatggt 21530588  T

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Target: scaffold0201 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 21741 - 21603
Alignment:
Q  17 agtatggtggctggaaaagcccctttccgtggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccc 116  Q
    ||||||||||| ||||||||||||| ||| |||||||||| |||||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||    
T  21741 agtatggtggccggaaaagccccttcccgcggcggaggaaaaaaagggtcgacggaaaaattgttcctttcatgaaattagttggaccaatggaaagccc 21642  T
Q  117 tagtcaagaggataaagaaaatggtcttactttttccga 155  Q
    | ||| |||||||||||||||||||||||||||||||||    
T  21641 tcgtcgagaggataaagaaaatggtcttactttttccga 21603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 17594430 - 17594524
Alignment:
Q  47 ggcggaggaagaaaagggtcggcgaaaaagttgttcctttcgtgaaattagttggaccaatggaaagccctagtcaagaggataaagaaaatggt 141  Q
    ||||||||||||||||||||  |  |||||||| ||||||||||||| || ||||||||| ||||||| || ||| || ||| ||||||||||||    
T  17594430 ggcggaggaagaaaagggtcaacagaaaagttgctcctttcgtgaaactaattggaccaacggaaagctctcgtcgagtggaaaaagaaaatggt 17594524  T

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