View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_76 (Length: 272)
Name: NF2729_high_76
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_76 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 28380029 - 28379787
Alignment:
| Q |
17 |
agcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttcttactcaacatcttcatcttc------tct |
110 |
Q |
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| T |
28380029 |
agcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttcttactcaacatcttcatcttcatcttctct |
28379930 |
T |
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| Q |
111 |
taacctgcaaaagtaaaaatatgaagctgcatttcatcagaaacatagttcaaggctaaaatagaagaaaataattaaaaaatttaatgctattaaacta |
210 |
Q |
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| T |
28379929 |
taacctacaaaagtaaaaatttgaagctgcatttcatcagaaacatagttcaaggctaaaatagaagaaaataattaaaaaaattaatgctattaaacta |
28379830 |
T |
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| Q |
211 |
ccataccatatataaatgtaatgataattaaaagaatttcaac |
253 |
Q |
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| T |
28379829 |
ccataccatatataaatgtaatgataattaaaagaatttcaac |
28379787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 26 - 253
Target Start/End: Complemental strand, 28389662 - 28389429
Alignment:
| Q |
26 |
caagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttcttactcaacatcttcatcttc------tcttaacctgca |
119 |
Q |
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||||||||| || | || ||||||||| ||||||||| | |||||||||| ||||||||||||||||||| ||||||||| ||||||||| || |
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| T |
28389662 |
caagaaacagaattgcacaatcattccaaaccaccaatataagataacatgtttgttcttcttactcaacactttcatcttcatcatttcttaacctaca |
28389563 |
T |
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| Q |
120 |
aaagtaaaaatatgaagctgcatttcatcagaaacatagttcaaggctaaaatagaagaaaataattaaaaaatttaatgctattaaactaccataccat |
219 |
Q |
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| T |
28389562 |
aaagtaaaaatttgaagctgcatttcataagaaacatatttcaaggctaaaaaagtagaaattaattaaaaaaattaatgctattaaactactataccat |
28389463 |
T |
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| Q |
220 |
atataaatgtaatgataattaaaagaatttcaac |
253 |
Q |
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| T |
28389462 |
atataaatatgatgataattaaaagaatttcaac |
28389429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 28414995 - 28415085
Alignment:
| Q |
17 |
agcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttcttactcaacatcttcatcttc |
107 |
Q |
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|||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
28414995 |
agcacatagcaagaaacagaacttcacaatcattccaaaccaccaaaagaagataacattattgttcttcatactcaacacgttcatcttc |
28415085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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