View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_78 (Length: 269)
Name: NF2729_high_78
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_78 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 38368162 - 38367970
Alignment:
| Q |
19 |
tatttgatcaaacatgaattccagaagttctaggattttgtatgggannnnnnnnnnnncctcccaaaggctagatatgtgtgaagatgtgatgttattg |
118 |
Q |
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| T |
38368162 |
tatttgatcaaacatgaattccagaagttctaggattttgtatgggatttttcttttttcctcccaaaggctagatatgggtgaagatgtgatgttattg |
38368063 |
T |
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| Q |
119 |
acaaaatgcaagacattttaccttgtgtgcctaaatgatccaagcaaacaaatgttgaaaaatttggtacatactacggtaatttgtagttct |
211 |
Q |
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| T |
38368062 |
acaaaatgcaagacattttaccttgtgtgcctaaatgatccaagcaaacaaatgttgaaaaatttggtacatactacggtaatttgtagttct |
38367970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 208 - 259
Target Start/End: Complemental strand, 38367821 - 38367770
Alignment:
| Q |
208 |
ttctattctacaaatctaatgagttgtttgctcaacaattatggtccctttg |
259 |
Q |
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| T |
38367821 |
ttctattctacaaatctaatgagttgtttgctcaacaattatggtccctttg |
38367770 |
T |
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