View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2729_high_8 (Length: 674)

Name: NF2729_high_8
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2729_high_8
NF2729_high_8
[»] chr2 (23 HSPs)
chr2 (235-674)||(43173196-43173618)
chr2 (289-671)||(43163561-43163939)
chr2 (270-334)||(34652033-34652097)
chr2 (235-306)||(11513872-11513943)
chr2 (256-370)||(43985204-43985319)
chr2 (268-334)||(1939329-1939395)
chr2 (230-340)||(31096270-31096380)
chr2 (235-329)||(43205283-43205377)
chr2 (249-334)||(10285848-10285933)
chr2 (248-305)||(16353848-16353905)
chr2 (235-308)||(36863648-36863721)
chr2 (236-304)||(8017409-8017477)
chr2 (231-306)||(11307282-11307357)
chr2 (235-306)||(18066102-18066173)
chr2 (231-334)||(43141841-43141944)
chr2 (279-337)||(16867757-16867815)
chr2 (231-317)||(25790096-25790182)
chr2 (200-317)||(28933758-28933880)
chr2 (236-317)||(22681199-22681280)
chr2 (203-262)||(17952770-17952834)
chr2 (275-375)||(24098116-24098215)
chr2 (204-305)||(39983281-39983386)
chr2 (200-232)||(41033054-41033086)
[»] chr7 (19 HSPs)
chr7 (92-304)||(24909495-24909707)
chr7 (92-304)||(24895188-24895399)
chr7 (200-317)||(28165025-28165147)
chr7 (235-368)||(48157082-48157216)
chr7 (200-275)||(33894557-33894636)
chr7 (279-340)||(27626114-27626175)
chr7 (1-33)||(24909404-24909436)
chr7 (235-335)||(44151476-44151576)
chr7 (205-264)||(49060479-49060543)
chr7 (235-334)||(12110334-12110433)
chr7 (1-32)||(24894761-24894792)
chr7 (196-265)||(24895418-24895484)
chr7 (200-306)||(27548197-27548308)
chr7 (200-315)||(40530425-40530540)
chr7 (248-306)||(11208436-11208494)
chr7 (235-305)||(30456476-30456546)
chr7 (235-317)||(40689000-40689082)
chr7 (236-317)||(38010689-38010770)
chr7 (205-340)||(39345422-39345550)
[»] chr6 (25 HSPs)
chr6 (200-334)||(6647323-6647460)
chr6 (238-334)||(9667982-9668078)
chr6 (235-347)||(7785728-7785838)
chr6 (235-303)||(1402970-1403038)
chr6 (268-340)||(31624097-31624169)
chr6 (236-351)||(2117378-2117493)
chr6 (279-353)||(4420661-4420735)
chr6 (286-352)||(8420176-8420242)
chr6 (200-264)||(10452427-10452496)
chr6 (238-334)||(25100020-25100116)
chr6 (286-375)||(2460106-2460196)
chr6 (310-375)||(32976027-32976093)
chr6 (279-368)||(34939762-34939852)
chr6 (236-301)||(415279-415344)
chr6 (200-273)||(1904754-1904827)
chr6 (200-273)||(1908987-1909060)
chr6 (200-284)||(4006648-4006737)
chr6 (239-375)||(32386518-32386655)
chr6 (270-334)||(2455819-2455883)
chr6 (200-232)||(4247738-4247770)
chr6 (232-276)||(6310279-6310323)
chr6 (200-232)||(31461612-31461644)
chr6 (200-232)||(31668789-31668821)
chr6 (135-167)||(31828913-31828945)
chr6 (236-304)||(33787772-33787840)
[»] chr1 (26 HSPs)
chr1 (235-334)||(7218071-7218170)
chr1 (235-297)||(25006068-25006130)
chr1 (243-340)||(11695843-11695940)
chr1 (200-315)||(17269184-17269304)
chr1 (200-253)||(13037798-13037851)
chr1 (231-334)||(17628569-17628672)
chr1 (235-306)||(27738205-27738276)
chr1 (248-340)||(28689443-28689537)
chr1 (235-317)||(4200203-4200285)
chr1 (248-334)||(4622080-4622166)
chr1 (231-264)||(15361683-15361716)
chr1 (207-334)||(3224364-3224496)
chr1 (268-340)||(27140485-27140557)
chr1 (229-340)||(29007707-29007818)
chr1 (249-315)||(12564515-12564581)
chr1 (235-305)||(26630437-26630507)
chr1 (248-334)||(35017563-35017649)
chr1 (266-340)||(35925695-35925769)
chr1 (238-315)||(16322826-16322903)
chr1 (242-315)||(23902083-23902156)
chr1 (235-332)||(30371122-30371219)
chr1 (248-328)||(12564877-12564957)
chr1 (237-297)||(25005831-25005891)
chr1 (254-306)||(27820362-27820414)
chr1 (235-335)||(30257657-30257757)
chr1 (200-232)||(42397697-42397729)
[»] chr4 (30 HSPs)
chr4 (235-375)||(21157742-21157883)
chr4 (235-334)||(52735096-52735194)
chr4 (238-334)||(2996550-2996646)
chr4 (235-315)||(49219113-49219193)
chr4 (200-352)||(30207550-30207706)
chr4 (205-263)||(55437354-55437415)
chr4 (238-340)||(23819066-23819168)
chr4 (268-306)||(28615530-28615568)
chr4 (286-375)||(27123307-27123397)
chr4 (229-315)||(28300315-28300401)
chr4 (200-233)||(2980574-2980607)
chr4 (235-264)||(4071856-4071885)
chr4 (235-264)||(8130148-8130177)
chr4 (245-334)||(11264285-11264374)
chr4 (237-334)||(20936226-20936323)
chr4 (235-264)||(24091437-24091466)
chr4 (237-306)||(30581702-30581771)
chr4 (200-273)||(51197539-51197612)
chr4 (270-334)||(1965950-1966014)
chr4 (200-232)||(4191673-4191705)
chr4 (267-331)||(4798566-4798630)
chr4 (270-334)||(6987738-6987802)
chr4 (235-315)||(10192258-10192337)
chr4 (202-261)||(22684586-22684650)
chr4 (202-238)||(25487643-25487679)
chr4 (200-260)||(36823939-36823998)
chr4 (242-306)||(38346011-38346075)
chr4 (235-291)||(44638213-44638269)
chr4 (200-232)||(47970252-47970284)
chr4 (248-367)||(52754587-52754706)
[»] chr3 (25 HSPs)
chr3 (205-340)||(21367611-21367747)
chr3 (235-334)||(37273105-37273207)
chr3 (204-291)||(20669562-20669649)
chr3 (209-340)||(50952277-50952412)
chr3 (200-352)||(20192585-20192742)
chr3 (229-306)||(51510218-51510295)
chr3 (200-263)||(1395605-1395673)
chr3 (200-334)||(44374642-44374780)
chr3 (242-340)||(45541552-45541650)
chr3 (244-313)||(901907-901976)
chr3 (248-317)||(24085352-24085421)
chr3 (235-334)||(21574465-21574563)
chr3 (267-335)||(52323890-52323960)
chr3 (202-283)||(41056978-41057060)
chr3 (200-238)||(42039093-42039131)
chr3 (237-354)||(1217777-1217894)
chr3 (231-308)||(5436229-5436306)
chr3 (248-317)||(14548735-14548804)
chr3 (235-340)||(36139852-36139957)
chr3 (231-264)||(37689451-37689484)
chr3 (240-315)||(2318623-2318699)
chr3 (235-291)||(19679368-19679424)
chr3 (235-335)||(24235680-24235779)
chr3 (203-334)||(30573911-30574045)
chr3 (200-232)||(41028955-41028987)
[»] chr8 (23 HSPs)
chr8 (236-340)||(5088823-5088931)
chr8 (200-317)||(13652149-13652271)
chr8 (200-317)||(13710792-13710914)
chr8 (200-305)||(29973015-29973125)
chr8 (231-308)||(9836877-9836954)
chr8 (237-334)||(12361168-12361265)
chr8 (202-333)||(28769337-28769473)
chr8 (200-266)||(5290575-5290641)
chr8 (268-317)||(43504758-43504807)
chr8 (200-284)||(1561213-1561297)
chr8 (200-257)||(8536123-8536184)
chr8 (237-337)||(24558829-24558929)
chr8 (250-334)||(39551206-39551290)
chr8 (200-263)||(40868205-40868271)
chr8 (279-334)||(42597456-42597511)
chr8 (235-306)||(3537054-3537127)
chr8 (235-360)||(6509273-6509399)
chr8 (268-334)||(20672757-20672823)
chr8 (201-333)||(42370359-42370496)
chr8 (126-167)||(43208290-43208331)
chr8 (270-334)||(25869263-25869327)
chr8 (205-277)||(33697011-33697083)
chr8 (200-315)||(38036128-38036248)
[»] chr5 (31 HSPs)
chr5 (198-298)||(34117569-34117671)
chr5 (231-287)||(34205209-34205265)
chr5 (205-300)||(38047886-38047986)
chr5 (200-306)||(31030155-31030264)
chr5 (237-306)||(39105440-39105509)
chr5 (237-354)||(41957428-41957545)
chr5 (206-259)||(10771953-10772008)
chr5 (235-315)||(12425545-12425625)
chr5 (235-315)||(12975321-12975400)
chr5 (267-334)||(17368682-17368749)
chr5 (248-315)||(26005013-26005080)
chr5 (230-340)||(4273368-4273478)
chr5 (237-315)||(10272447-10272525)
chr5 (251-340)||(10391331-10391421)
chr5 (204-315)||(18704052-18704167)
chr5 (279-337)||(33533533-33533591)
chr5 (200-306)||(29588814-29588924)
chr5 (280-353)||(31723824-31723897)
chr5 (241-306)||(32408617-32408682)
chr5 (200-264)||(35135729-35135798)
chr5 (237-306)||(35553213-35553282)
chr5 (248-317)||(37588374-37588443)
chr5 (242-302)||(912677-912737)
chr5 (210-262)||(5563648-5563699)
chr5 (200-232)||(7096231-7096263)
chr5 (200-232)||(13224363-13224395)
chr5 (248-340)||(13604840-13604932)
chr5 (248-340)||(21768188-21768280)
chr5 (204-331)||(34690812-34690943)
chr5 (267-331)||(37611215-37611279)
chr5 (267-331)||(37787945-37788009)
[»] scaffold0590 (1 HSPs)
scaffold0590 (200-260)||(1145-1210)
[»] scaffold0275 (1 HSPs)
scaffold0275 (200-260)||(2765-2830)


Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 235 - 674
Target Start/End: Original strand, 43173196 - 43173618
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43173196 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 43173295  T
Q  335 actgttcctgtaagctcttcaaacagtttcacaagtacttacactttttccttttccaaagatatccagatgatatttatgacagaacatggacatctta 434  Q
    |||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43173296 actgttcctgt-----------------tcacaagtacttacactttttccttttccaaagatatccagatgatatttatgacagaacatggacatctta 43173378  T
Q  435 taattcaattgattgggaaaaaatcgacacttcactcaccatggaccaaagagcacctccattcaactttttaatggcaccaccctccactgtcatgaga 534  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43173379 taattcaattgattgggaaaaaatcgactcttcactcaccatggaccaaagagcacctccattcaactttttaatggcaccaccctccactgtcatgaga 43173478  T
Q  535 acaacagcaattccagcaaatgccagtgacaacatggaattttccttccttcccaagtataatgcctccacatattatgtgtacatgtactttgctgaaa 634  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43173479 acaacagcaattccagcaaatgccagtgacaacatggaatattccttccttcccaagtataatgcctccacatattatgtgtacatgtactttgctgaaa 43173578  T
Q  635 tccagaagctccaagcaaatcaaattagagagttcaacat 674  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  43173579 tccagaagatccaggcaaatcaaattagagagttcaacat 43173618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 289 - 671
Target Start/End: Original strand, 43163561 - 43163939
Alignment:
Q  289 agatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgttcctgtaagctcttcaaacagtttcacaagtacttacactttttccttt 388  Q
    ||||||||||| || ||||| |||||| | |||||| |||| |||||||||| || ||| |||| ||||| |||||||||||||||||||||||||||||    
T  43163561 agatcttatggtaa-aagttaaaaacatcttgtggaaatgtaataaactgtttctataaactctccaaactgtttcacaagtacttacactttttccttt 43163659  T
Q  389 tccaaagatatccagatgatatttatgacagaacatggacatcttataattcaattgattgggaaaaaatcgacacttcactcaccatggaccaaagagc 488  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||   ||    
T  43163660 tccaaagatatccagatgatgtttatgacagaacatggacaccttataactcaattgattggaaaaaaatagacacttcactcaccatagaccaa---gc 43163756  T
Q  489 acctccattcaactttttaatggcaccaccctccactgtcatgagaacaacagcaattccagcaaatgccagtgacaacatggaattttccttccttccc 588  Q
    |||| |||||| ||||     || ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43163757 accttcattcagctttacgccggtaccaccctccaatgtgatgcgaacaacagcaattccagcaaatgccagtgacaacatggaattttccttccttccc 43163856  T
Q  589 aagtataatgcctccacatattatgtgtacatgtactttgctgaaatccagaagctccaagcaaatcaaattagagagttcaa 671  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||    
T  43163857 aagtataattcctccagatattatgtgtacatgtactttgctgaaatccagaagctccaggaaaatcaaatcagagagttcaa 43163939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 34652097 - 34652033
Alignment:
Q  270 tttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||| ||| ||||||||||||| |||||||||||||||| |||||||| | ||||||||||||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataa 34652033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 11513872 - 11513943
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataag 306  Q
    |||||||||||| |||||||||||||||||  ||||||| ||| |||||| |||||| ||| ||||||||||    
T  11513872 taaagtcaaattgttttcatataagctataagttgttttcataagctatcatggagaacttttggaaataag 11513943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 256 - 370
Target Start/End: Original strand, 43985204 - 43985319
Alignment:
Q  256 taagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgttcctgtaagctct-tc 354  Q
    ||||||||| ||||||||| || |||| | || ||| |||||||||| ||||| |||| ||| | ||||||||||||||  |||| | |||| |||| ||    
T  43985204 taagctataatttgtttttgtaagctaccgtgaagagcttatggaaacaagttgaaaaaagcttatggacatgtcataagttgtttcagtaatctctctc 43985303  T
Q  355 aaacagtttcacaagt 370  Q
    ||||||||| ||||||    
T  43985304 aaacagttttacaagt 43985319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 334
Target Start/End: Complemental strand, 1939395 - 1939329
Alignment:
Q  268 tgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||| ||| |||||  |||||| |||||||||||||||| |||||||| | ||||||||||||||    
T  1939395 tgttttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtcataa 1939329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 340
Target Start/End: Original strand, 31096270 - 31096380
Alignment:
Q  230 aaaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgt 329  Q
    |||| |||||||||| | ||||||| |||||||    ||| ||| | ||||||||||  ||| |||||| |||||||||||||||||| | |||||||||    
T  31096270 aaaattaaagtcaaactgttttcatttaagctaatagttgctttcacaggctatctttaagaacttatgaaaataagtttaaaacagcttatggacatgt 31096369  T
Q  330 cataaactgtt 340  Q
     || |||||||    
T  31096370 tattaactgtt 31096380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 329
Target Start/End: Original strand, 43205283 - 43205377
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgt 329  Q
    ||||| |||| | |||||||||||| |||| | |||||| ||| ||||||  ||||| |||||||||||||||| |||||||  || ||||||||    
T  43205283 taaagccaaactgttttcatataagatataatctgttttcataagctatcacggagagcttatggaaataagttgaaaacagtttgcggacatgt 43205377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 334
Target Start/End: Original strand, 10285848 - 10285933
Alignment:
Q  249 tttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    ||||||||||||||||  | ||||  ||| |||| | | |||| |||||||||||||||| |||||||| | ||||||||||||||    
T  10285848 tttcatataagctataagtcgtttgcataagctaacatagagaacttatggaaataagttgaaaacagcttatggacatgtcataa 10285933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 16353848 - 16353905
Alignment:
Q  248 ttttcatataagctatattttgtttttataggctatcttggagatcttatggaaataa 305  Q
    |||||||||||||||||   |||||||||| ||||||||||||||||| || ||||||    
T  16353848 ttttcatataagctataagctgtttttataagctatcttggagatcttgtgaaaataa 16353905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 235 - 308
Target Start/End: Complemental strand, 36863721 - 36863648
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtt 308  Q
    ||||||||||  ||||| ||||||| ||||  ||||||| ||| ||||||||||||| |||||| |||||||||    
T  36863721 taaagtcaaacaatttttatataagttataaattgttttcataagctatcttggagagcttatgaaaataagtt 36863648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 8017409 - 8017477
Alignment:
Q  236 aaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaata 304  Q
    ||||| |||||||||||||||||||| ||   |||||| ||| ||||||||||||| |||||| |||||    
T  8017409 aaagttaaattattttcatataagctgtaaactgttttcataagctatcttggagaacttatgaaaata 8017477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 11307282 - 11307357
Alignment:
Q  231 aaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataag 306  Q
    |||||||||||||| |||||||||| ||||||||  || | || ||| ||||||||||||| || ||| |||||||    
T  11307282 aaagtaaagtcaaactattttcataaaagctataacttatcttcatacgctatcttggagagctaatgaaaataag 11307357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 18066102 - 18066173
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataag 306  Q
    |||||| ||||| |||||||||||||||||   |||||| ||| ||||||||||||| |||| | |||||||    
T  18066102 taaagttaaattgttttcatataagctataagctgttttcataagctatcttggagaacttaagaaaataag 18066173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 334
Target Start/End: Original strand, 43141841 - 43141944
Alignment:
Q  231 aaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtc 330  Q
    |||||||||||||||| ||| |||||||||||||   |||||| ||| |||||| || |||  ||||||||||||  | |||||| | | ||| ||||||    
T  43141841 aaagtaaagtcaaattgtttccatataagctataagatgttttcataagctatcctgaagagtttatggaaataaaatgaaaacaacttatgggcatgtc 43141940  T
Q  331 ataa 334  Q
    ||||    
T  43141941 ataa 43141944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 16867757 - 16867815
Alignment:
Q  279 gctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaact 337  Q
    ||||||||||||| |||||||||||||||| |||||| | | || | ||||||||||||    
T  16867757 gctatcttggagagcttatggaaataagttgaaaacaacttatgaatatgtcataaact 16867815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 25790096 - 25790182
Alignment:
Q  231 aaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagc 317  Q
    ||||| |||||||| | ||||||||||||||| |  ||||||  |||  ||||| |||||| |||||| ||||||||| ||||||||    
T  25790096 aaagtgaagtcaaactgttttcatataagctacaaattgtttggataatctatcctggagagcttatgaaaataagttcaaaacagc 25790182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 28933758 - 28933880
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaa-----aaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatct 294  Q
    |||||| ||||||||||||||| | ||||||     ||| | || ||||||||||||||| |||| ||||  ||||||| ||| |||||| | |||| ||    
T  28933758 agtgctcatgtataagctatttatataacaaaagataaaatcaaatcaaattattttcatttaagttataaattgttttcataagctatcctagagagct 28933857  T
Q  295 tatggaaataagtttaaaacagc 317  Q
     || |||||||||| ||||||||    
T  28933858 gatagaaataagttgaaaacagc 28933880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 22681280 - 22681199
Alignment:
Q  236 aaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagc 317  Q
    |||| |||||| |||||||||||||||||   |||||| |||  ||||| | |||| |||||||||||||| | ||||||||    
T  22681280 aaagccaaattgttttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagc 22681199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 17952834 - 17952770
Alignment:
Q  203 gcttatgtataagctatttctttaacaaaa-----agtaaagtcaaattattttcatataagcta 262  Q
    |||||| |||||||||||||| ||||||||     | |||||||||| |||||||||||||||||    
T  17952834 gcttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagcta 17952770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 275 - 375
Target Start/End: Original strand, 24098116 - 24098215
Alignment:
Q  275 ataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgttcctgtaagctcttcaaacagtttcacaagtactt 374  Q
    |||| |||| ||||||| |||||||||||||| | |||||||  | ||| ||||| || || |||| |||||||||| ||||| ||||| |||||| |||    
T  24098116 atagcctattttggagagcttatggaaataagctgaaaacagtttatgggcatgttattaattgtttctgtaagctc-tcaaatagttttacaagtgctt 24098214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 305
Target Start/End: Original strand, 39983281 - 39983386
Alignment:
Q  204 cttatgtataagctatttctttaacaaa----aagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatgg 299  Q
    ||||| |||||||||||| | |||||||    || |||| | |||| ||||||||||||||||||  ||||||| ||| |||||| |||||| || |||     
T  39983281 cttatatataagctatttttgtaacaaaggtaaaataaaataaaataattttcatataagctataagttgttttcataagctatcctggagagctaatga 39983380  T
Q  300 aaataa 305  Q
    ||||||    
T  39983381 aaataa 39983386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 41033086 - 41033054
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa 232  Q
    |||||||||||||||||||||||| ||||||||    
T  41033086 agtgcttatgtataagctatttctataacaaaa 41033054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 3e-90; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 92 - 304
Target Start/End: Original strand, 24909495 - 24909707
Alignment:
Q  92 ggatatctgtcccataaagttgaactcagaagtactaaaaccttgtttttataaacaacttaattaagcgcttatacgataaacatcaataagactttat 191  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24909495 ggatatctgtcccataaagttgaactcaggagtactaaaaccttgttttgataaacaacttaattaagcgcttatacgataaacatcaataagactttat 24909594  T
Q  192 catgttttagtgcttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggaga 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||| | |||  ||||||    
T  24909595 catgttttagtgcttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagctataagttgttttcataagatattgtggaga 24909694  T
Q  292 tcttatggaaata 304  Q
     ||| ||||||||    
T  24909695 gcttgtggaaata 24909707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 92 - 304
Target Start/End: Original strand, 24895188 - 24895399
Alignment:
Q  92 ggatatctgtcccataaagttgaactcagaagtactaaaaccttgtttttataaacaacttaattaagcgcttatacgataaacatcaataagactttat 191  Q
    ||||||| |||||||||||||||||| || ||||||  ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  24895188 ggatatcagtcccataaagttgaacttaggagtactggaaccttgttttgataaacaacttaattaagctcttataggataaacatcaataagactttat 24895287  T
Q  192 catgttttagtgcttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggaga 291  Q
    ||| |||||||| |||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||  ||||||| | | | |||  ||||||    
T  24895288 catattttagtgattatctataagctatttcgttaac-aaaagtaaagtcaaattattttcatataagctataagttgttttcacaagatattgtggaga 24895386  T
Q  292 tcttatggaaata 304  Q
     ||||||||||||    
T  24895387 gcttatggaaata 24895399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 28165025 - 28165147
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaaagtaaa-----gtcaaattattttcatataagctatattttgtttttataggctatcttggagatct 294  Q
    |||||||||||||||| | ||||| ||||||||  ||||     |||||||| |||| ||||||||||||   ||| |||||| |||||| |||||| ||    
T  28165025 agtgcttatgtataagttctttctataacaaaagataaaatgaagtcaaattgttttaatataagctataaactgtctttataagctatcatggagagct 28165124  T
Q  295 tatggaaataagtttaaaacagc 317  Q
    |||||||||||||| ||||||||    
T  28165125 tatggaaataagttgaaaacagc 28165147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 235 - 368
Target Start/End: Complemental strand, 48157216 - 48157082
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||| ||||| |||| |||||||||||| |||||||| | | |||||   |||||||||||||||||||| | |||||||| | |||||||| |||||    
T  48157216 taaagtgaaattgttttaatataagctataatttgttttcacaagctattcgggagatcttatggaaataagctgaaaacagcttatggacatggcataa 48157117  T
Q  335 actgttcctgtaagctct-tcaaacagtttcacaa 368  Q
      |||| || ||||||||  |||||||| ||||||    
T  48157116 gttgtttctataagctctcccaaacagtctcacaa 48157082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 33894557 - 33894636
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaaagta----aagtcaaattattttcatataagctatattttgttttta 275  Q
    |||||||||||||||||||||||| ||||||||  ||    |||||||| | |||||||||||||| ||| |||||||||    
T  33894557 agtgcttatgtataagctatttctataacaaaagataaaataagtcaaactgttttcatataagctttatgttgttttta 33894636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 27626175 - 27626114
Alignment:
Q  279 gctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgtt 340  Q
    |||||| || ||| ||||||||||||||||||||||||  | |||||||||||||| |||||    
T  27626175 gctatcatgaagagcttatggaaataagtttaaaacagtttatggacatgtcataagctgtt 27626114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 24909404 - 24909436
Alignment:
Q  1 tagctaaagcttttagttttcatcactgtcaac 33  Q
    |||||||||||||||||||||||||||||||||    
T  24909404 tagctaaagcttttagttttcatcactgtcaac 24909436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 235 - 335
Target Start/End: Complemental strand, 44151576 - 44151476
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||| ||| | ||| |||||||||||||  ||||||| |||  |||||||| | | |||||||||||||| | |||||| | | ||||||||||||||    
T  44151576 taaagtaaaactgtttccatataagctataagttgttttcataaactatcttgaaaagcttatggaaataagctgaaaacatcttatggacatgtcataa 44151477  T
Q  335 a 335  Q
    |    
T  44151476 a 44151476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 49060479 - 49060543
Alignment:
Q  205 ttatgtataagctatttctttaacaa-----aaagtaaagtcaaattattttcatataagctata 264  Q
    ||||||||||||||||||| ||||||     ||| ||||||||||||||||| ||||||||||||    
T  49060479 ttatgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctata 49060543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 12110334 - 12110433
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||||||||| ||||  |||||||||||   |||||| ||| ||||||||| ||| |||||| ||||||  | |||||||  |||| |||||||||||    
T  12110334 taaagtcaaattgttttggtataagctataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaaacagtttgtgaacatgtcataa 12110433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 24894761 - 24894792
Alignment:
Q  1 tagctaaagcttttagttttcatcactgtcaa 32  Q
    ||||||||||||||||||||||||||||||||    
T  24894761 tagctaaagcttttagttttcatcactgtcaa 24894792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 24895418 - 24895484
Alignment:
Q  196 ttttagtgcttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagctatat 265  Q
    ||||||||||||| || ||| ||||||||||| ||||   |||| ||||||||||||| |||||||||||    
T  24895418 ttttagtgcttatatacaagttatttctttaaaaaaa---aaagacaaattattttcaaataagctatat 24895484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 306
Target Start/End: Original strand, 27548197 - 27548308
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa-----agtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatct 294  Q
    ||||||||| ||||||||||||| ||| |||||     | ||||||| |||| ||||||| |||||||||   |||||| ||| ||||||||||| | ||    
T  27548197 agtgcttatctataagctatttccttagcaaaagataaaataaagtctaattgttttcatttaagctataagctgttttcataagctatcttggataact 27548296  T
Q  295 tatggaaataag 306  Q
    |||||| |||||    
T  27548297 tatggagataag 27548308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 315
Target Start/End: Complemental strand, 40530540 - 40530425
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatgg 299  Q
    |||||||||||||||||||||| | | ||||||  ||||| || ||| |||| | | ||||||||  ||||||| ||| |||||| |  ||| ||||||     
T  40530540 agtgcttatgtataagctatttgtgtgacaaaacataaagacagattgtttttacaaaagctataagttgttttaataagctatcctaaagaacttatga 40530441  T
Q  300 aaataagtttaaaaca 315  Q
    ||||||||| ||||||    
T  40530440 aaataagttgaaaaca 40530425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 248 - 306
Target Start/End: Original strand, 11208436 - 11208494
Alignment:
Q  248 ttttcatataagctatattttgtttttataggctatcttggagatcttatggaaataag 306  Q
    ||||||||||| |||||| ||||||| ||| ||||||||||  || |||||||||||||    
T  11208436 ttttcatataaactatatgttgttttcataagctatcttgggtattttatggaaataag 11208494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 30456546 - 30456476
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataa 305  Q
    |||||||||||| |||||||||||| ||||  | ||||| |||  |||||||||||| |||||| ||||||    
T  30456546 taaagtcaaattgttttcatataagttataagtggttttcataaactatcttggagagcttatgaaaataa 30456476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 235 - 317
Target Start/End: Complemental strand, 40689082 - 40689000
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagc 317  Q
    |||||| |||||||||||||||||||||||   ||| || ||| |||||| |||| | |||||| ||||||| | ||||||||    
T  40689082 taaagttaaattattttcatataagctataagctgtgttcataagctatcctggataacttatgaaaataagctcaaaacagc 40689000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 38010689 - 38010770
Alignment:
Q  236 aaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagc 317  Q
    |||| |||||| |||||||||||||||||   |||||| |||  ||||| | |||| |||||||||||||| | ||||||||    
T  38010689 aaagccaaattgttttcatataagctataagctgttttcataatctatcctagagaacttatggaaataagctaaaaacagc 38010770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 340
Target Start/End: Original strand, 39345422 - 39345550
Alignment:
Q  205 ttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaata 304  Q
    ||||||||||||||||||  ||||||||  || ||||||| | |||||||||||||       |||||| | | |||||| ||  || ||||||||||||    
T  39345422 ttatgtataagctatttcagtaacaaaagatagagtcaaactgttttcatataagc-------tgttttcaaaagctatcctgacgaccttatggaaata 39345514  T
Q  305 agtttaaaacagcatgtggacatgtcataaactgtt 340  Q
    || | ||| || | | ||||||||||||||||||||    
T  39345515 agctgaaagcaacttatggacatgtcataaactgtt 39345550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 200 - 334
Target Start/End: Original strand, 6647323 - 6647460
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaaagtaa---agtcaaattattttcatataagctatattttgtttttataggctatcttggagatctta 296  Q
    |||||||||||||||| ||||||| ||||||||| |||   |||||||||| ||| ||||| | |||| | |||||| ||| |||||||| |||| ||||    
T  6647323 agtgcttatgtataagttatttctataacaaaaaataataaagtcaaattactttaatataggttataatctgttttcataagctatcttagagagctta 6647422  T
Q  297 tggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    || ||||||||| |||||| | | || |||||||||||    
T  6647423 tgaaaataagttgaaaacatcttatgaacatgtcataa 6647460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 238 - 334
Target Start/End: Complemental strand, 9668078 - 9667982
Alignment:
Q  238 agtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||| |||| ||||||||||||||| | |||||||| |||  || | | ||||| |||||||||||||||| |||||||| | ||||||||||||||    
T  9668078 agtcgaattgttttcatataagctacaatttgttttcataaactgtttcggagagcttatggaaataagttgaaaacagcttatggacatgtcataa 9667982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 235 - 347
Target Start/End: Complemental strand, 7785838 - 7785728
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||||||| | |||||||||||||||||  |||| || ||  ||||| ||||||| |||||||||||||| | |||||| | | | ||||||||||||    
T  7785838 taaagtcaaactcttttcatataagctataaattgtcttcat--gctattttggagagcttatggaaataagctgaaaacaacttatagacatgtcataa 7785741  T
Q  335 actgttcctgtaa 347  Q
     ||||| ||||||    
T  7785740 gctgtttctgtaa 7785728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 235 - 303
Target Start/End: Original strand, 1402970 - 1403038
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaat 303  Q
    |||||| ||| |||||||||||||||||||  ||||||| ||| |||||| |||||||||||| |||||    
T  1402970 taaagttaaactattttcatataagctataaattgttttcataagctatcatggagatcttatagaaat 1403038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 31624097 - 31624169
Alignment:
Q  268 tgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgtt 340  Q
    |||||| |||||||||||||||||  ||||| ||||||||| |||||||| | || ||||||||||| |||||    
T  31624097 tgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatgaacatgtcataagctgtt 31624169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 236 - 351
Target Start/End: Original strand, 2117378 - 2117493
Alignment:
Q  236 aaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaa 335  Q
    ||||||||| ||||||||||||| |||||  ||||||| ||| | |||| | |||| ||||| |||||||| | |||||||| | | |||||| ||||||    
T  2117378 aaagtcaaactattttcatataatctataagttgttttcataagttatcctagagagcttattgaaataagctaaaaacagcttatagacatgccataaa 2117477  T
Q  336 ctgttcctgtaagctc 351  Q
     |||| || |||||||    
T  2117478 ttgtttctataagctc 2117493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 4420661 - 4420735
Alignment:
Q  279 gctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgttcctgtaagctctt 353  Q
    ||||||||||||| |||||||||||||| | |||||||| | || |||||||||||  |||| || |||||||||    
T  4420661 gctatcttggagagcttatggaaataagctgaaaacagcttatgaacatgtcataatttgtttctataagctctt 4420735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 8420242 - 8420176
Alignment:
Q  286 tggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgttcctgtaagctct 352  Q
    |||||| |||||||||||||||| |||| ||| |||||||||||||||| || || || ||||||||    
T  8420242 tggagagcttatggaaataagttgaaaatagcttgtggacatgtcataagctatttctataagctct 8420176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 10452496 - 10452427
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa-----agtaaagtcaaattattttcatataagctata 264  Q
    |||||||||||||||||||||||| ||||||||     | |||| ||||| |||||||||||||||||||    
T  10452496 agtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagctata 10452427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 238 - 334
Target Start/End: Original strand, 25100020 - 25100116
Alignment:
Q  238 agtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    ||||||||| |||||||| ||| ||||  ||||||| ||| ||||||||  ||| ||||| |||||||||| |||| ||||  || |||||||||||    
T  25100020 agtcaaattgttttcatagaagttataagttgttttcataagctatcttaaagagcttatagaaataagttgaaaatagcaaatgaacatgtcataa 25100116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 375
Target Start/End: Complemental strand, 2460196 - 2460106
Alignment:
Q  286 tggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgttcctgtaagctct-tcaaacagtttcacaagtactta 375  Q
    |||||| |||||||||||||||| |||||| | |   ||||||||||||  |||| |  |||||||| ||||||||| |||||||||||||    
T  2460196 tggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtactta 2460106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 32976027 - 32976093
Alignment:
Q  310 aaaacagcatgtggacatgtcataaactgttcctgtaagctcttc-aaacagtttcacaagtactta 375  Q
    |||||||| | |||| ||||||||| ||||| || |||||||||| ||||||| |||||||||||||    
T  32976027 aaaacagcttatggaaatgtcataagctgtttctataagctcttccaaacagtctcacaagtactta 32976093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 368
Target Start/End: Original strand, 34939762 - 34939852
Alignment:
Q  279 gctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgttcctgtaagctcttc-aaacagtttcacaa 368  Q
    |||||| ||||||  ||||||||||||| | ||||||   | |||||||||||||| ||||| | ||||||||| | ||||||||||||||    
T  34939762 gctatcctggagagtttatggaaataagctgaaaacaatttatggacatgtcataagctgtttccgtaagctctccaaaacagtttcacaa 34939852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 301
Target Start/End: Original strand, 415279 - 415344
Alignment:
Q  236 aaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaa 301  Q
    ||||| ||||| ||||| |||||||||||  ||||||||||| |||||  |||||| |||||||||    
T  415279 aaagttaaattgttttcgtataagctataagttgtttttataagctatagtggagaacttatggaa 415344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 1904754 - 1904827
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagctatattttgtttt 273  Q
    |||| ||||||||||||||||   | || | ||| ||||||||||||||||| ||||||||||||  |||||||    
T  1904754 agtgattatgtataagctattaactaaatataaaataaagtcaaattatttttatataagctatagattgtttt 1904827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 1908987 - 1909060
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagctatattttgtttt 273  Q
    |||| ||||||||||||||||   | || | ||| ||||||||||||||||| ||||||||||||  |||||||    
T  1908987 agtgattatgtataagctattaactaaatataaaataaagtcaaattatttttatataagctatagattgtttt 1909060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 4006648 - 4006737
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaa-----aagtaaagtcaaattattttcatataagctatattttgtttttataggctatc 284  Q
    |||||||||| ||||| ||||||| |||||||     || |||||||||||| |||| ||||||||||||  ||||||| ||| ||||||    
T  4006648 agtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcataagctatc 4006737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 375
Target Start/End: Complemental strand, 32386655 - 32386518
Alignment:
Q  239 gtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactg 338  Q
    |||||||| |||||||||||| ||||  ||||||| ||  | |||| |||||| |||||| ||||||| | ||||||   ||||||||||| ||||  |     
T  32386655 gtcaaattgttttcatataaggtatacgttgttttcattagttatcctggagagcttatgaaaataagctgaaaacaagttgtggacatgttataagata 32386556  T
Q  339 ttcctgtaagctc-ttcaaacagtttcacaagtactta 375  Q
    || |  ||||||| ||||||| || |||||||||||||    
T  32386555 tttccataagctctttcaaacggtctcacaagtactta 32386518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 2455819 - 2455883
Alignment:
Q  270 tttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||| ||| ||||||||||||| |||||||||||||||| |||| ||  | ||| ||||||||||    
T  2455819 ttttcataagctatcttggagagcttatggaaataagttgaaaatagtttatgggcatgtcataa 2455883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 4247770 - 4247738
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa 232  Q
    |||||||||||||||||||||||| ||||||||    
T  4247770 agtgcttatgtataagctatttctataacaaaa 4247738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 6310323 - 6310279
Alignment:
Q  232 aagtaaagtcaaattattttcatataagctatattttgtttttat 276  Q
    |||||||||| |||| |||||||||||||||||  ||||||||||    
T  6310323 aagtaaagtctaattgttttcatataagctataagttgtttttat 6310279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 31461612 - 31461644
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa 232  Q
    |||||||||||||||||||||||| ||||||||    
T  31461612 agtgcttatgtataagctatttctataacaaaa 31461644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 31668821 - 31668789
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa 232  Q
    |||||||||||||||||||||||| ||||||||    
T  31668821 agtgcttatgtataagctatttctataacaaaa 31668789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 31828913 - 31828945
Alignment:
Q  135 tgtttttataaacaacttaattaagcgcttata 167  Q
    ||||| |||||||||||||||||||||||||||    
T  31828913 tgtttctataaacaacttaattaagcgcttata 31828945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 33787840 - 33787772
Alignment:
Q  236 aaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaata 304  Q
    |||||||||||  ||||||||||| ||||   |||||| ||| | ||||||||||| ||||||||||||    
T  33787840 aaagtcaaattgatttcatataagttataagctgttttcataagttatcttggagagcttatggaaata 33787772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 235 - 334
Target Start/End: Complemental strand, 7218170 - 7218071
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||||||||| |||||||||||||||||  ||||||| |||  ||||| |||||| |||||| ||||||||| |||||||| |||| || ||||||||    
T  7218170 taaagtcaaattgttttcatataagctataagttgttttcataacctatcctggagaacttatgaaaataagttgaaaacagcttgtgaacgtgtcataa 7218071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 25006130 - 25006068
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttat 297  Q
    |||||||||||| |||||||||||||||||  ||||||| ||| |||||||||||||||||||    
T  25006130 taaagtcaaattgttttcatataagctataagttgttttcataagctatcttggagatcttat 25006068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 243 - 340
Target Start/End: Original strand, 11695843 - 11695940
Alignment:
Q  243 aattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgtt 340  Q
    |||| |||||| ||||||||||   ||||||||||| ||||  |||| | |||||| ||||||||| |||||||| | ||||||||||||||||||||    
T  11695843 aattgttttcaaataagctataaaatgtttttatagactattctggaaagcttatgaaaataagttgaaaacagcttatggacatgtcataaactgtt 11695940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 200 - 315
Target Start/End: Original strand, 17269184 - 17269304
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa-----agtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatct 294  Q
    |||||||||||||||| |||||||  |||||||     | |||||||||||| ||||||||||||| |||  ||||||| ||| |||||| |||||| ||    
T  17269184 agtgcttatgtataagttatttctagaacaaaagtgaaaataaagtcaaattgttttcatataagcaataagttgttttcataagctatcctggagagct 17269283  T
Q  295 tatggaaataagtttaaaaca 315  Q
    || || |||||||| ||||||    
T  17269284 tacggtaataagttaaaaaca 17269304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 13037798 - 13037851
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaaagtaaagtcaaattattttca 253  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||||| |||||    
T  13037798 agtgcttatgtataagctatttctataacaaaagataaagtcaaattagtttca 13037851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 231 - 334
Target Start/End: Original strand, 17628569 - 17628672
Alignment:
Q  231 aaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtc 330  Q
    |||||||||||||||| |||||||||||  ||||   |||||||||   |||| |||||| |||| |||||||| | | |||||||| | ||||||||||    
T  17628569 aaagtaaagtcaaattgttttcatataaattataagctgtttttattaactattttggaggtcttttggaaatatgctgaaaacagcttatggacatgtc 17628668  T
Q  331 ataa 334  Q
    ||||    
T  17628669 ataa 17628672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 27738276 - 27738205
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataag 306  Q
    |||||||||||| ||||||||||||||||| |||||||| ||| |||||   ||||| |||||||| |||||    
T  27738276 taaagtcaaattgttttcatataagctataatttgttttcataagctatacaggagagcttatggatataag 27738205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 248 - 340
Target Start/End: Complemental strand, 28689537 - 28689443
Alignment:
Q  248 ttttcatataagctatattttgtttt--tataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgtt 340  Q
    |||||||||||||||||  |||||||  |||| ||||||||||| | |||||| ||||||| | |||||| | | |||||||||||||| |||||    
T  28689537 ttttcatataagctataagttgttttcatataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggacatgtcataagctgtt 28689443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 317
Target Start/End: Original strand, 4200203 - 4200285
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagc 317  Q
    ||||||||| || |||||||||||||||||| |||||||  || | |||| |||||  |||||| ||||||| ||||||||||    
T  4200203 taaagtcaagttgttttcatataagctatatattgttttcgtaagatatcctggagggcttatgaaaataagcttaaaacagc 4200285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 248 - 334
Target Start/End: Original strand, 4622080 - 4622166
Alignment:
Q  248 ttttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||||||||||||||   |||||  ||| ||||||||||||| ||| || ||||||| | |||||||| | ||||||||||||||    
T  4622080 ttttcatataagctataagctgtttccatatgctatcttggagagcttgtgaaaataagctaaaaacagcttatggacatgtcataa 4622166  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 15361683 - 15361716
Alignment:
Q  231 aaagtaaagtcaaattattttcatataagctata 264  Q
    ||||||||||||||||||||||||||||||||||    
T  15361683 aaagtaaagtcaaattattttcatataagctata 15361716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 207 - 334
Target Start/End: Original strand, 3224364 - 3224496
Alignment:
Q  207 atgtataagctatttctttaacaaa-----aagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaa 301  Q
    ||||||||||||||| | |||||||     |||||||||||||||   |||||||||||||||   |||||||||| |||||  | |||| |||||| ||    
T  3224364 atgtataagctatttatataacaaaggatcaagtaaagtcaaattgaattcatataagctatagggtgtttttataagctattctagagaacttatgaaa 3224463  T
Q  302 ataagtttaaaacagcatgtggacatgtcataa 334  Q
    ||||| | | |||| | | ||||||||||||||    
T  3224464 ataagctgagaacaacttatggacatgtcataa 3224496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 268 - 340
Target Start/End: Original strand, 27140485 - 27140557
Alignment:
Q  268 tgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgtt 340  Q
    |||||||||| |||||| |||||| |||||| ||||||| | |||||| | | |||||||||||||| |||||    
T  27140485 tgtttttataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgtt 27140557  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 340
Target Start/End: Complemental strand, 29007818 - 29007707
Alignment:
Q  229 aaaaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatg 328  Q
    ||||| |||||||||| |||||||||||||||||||  ||||||| || |||||  ||| | | ||||| |||||||| | |||||| | | || ||||     
T  29007818 aaaaattaaagtcaaactattttcatataagctataagttgttttcatcggctactttgaaaagcttatcgaaataagctgaaaacaacttatgaacata 29007719  T
Q  329 tcataaactgtt 340  Q
    ||||||| ||||    
T  29007718 tcataaattgtt 29007707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 12564581 - 12564515
Alignment:
Q  249 tttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaaca 315  Q
    ||||||| ||| ||||  ||||||| ||| ||||||||||||| |||||||||||||| | ||||||    
T  12564581 tttcatacaaggtataggttgttttcataagctatcttggagaacttatggaaataagctgaaaaca 12564515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 26630437 - 26630507
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataa 305  Q
    |||||| ||||| |||||||||||||||||   |||||| ||| |||||| |||||| | |||||||||||    
T  26630437 taaagtaaaattgttttcatataagctataaactgttttgatacgctatcctggagaacatatggaaataa 26630507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 248 - 334
Target Start/End: Original strand, 35017563 - 35017649
Alignment:
Q  248 ttttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    ||||| ||||| ||||||  |||||| ||| ||| || |||||| |||||||||||||||| |||| | | | ||||||||||||||    
T  35017563 ttttcgtataatctatatgctgttttcataagctgtcctggagagcttatggaaataagttgaaaataacttatggacatgtcataa 35017649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 340
Target Start/End: Original strand, 35925695 - 35925769
Alignment:
Q  266 tttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgtt 340  Q
    |||||||  ||| |||||| ||||||  ||||||||||||||| |||||||| | || ||||||||||| |||||    
T  35925695 tttgtttccataagctatcatggagagtttatggaaataagttgaaaacagcttatgaacatgtcataagctgtt 35925769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 16322826 - 16322903
Alignment:
Q  238 agtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaaca 315  Q
    ||||||| |||||||||| ||| ||||   |||||| ||||||||| ||| ||| |||||||||||||| | ||||||    
T  16322826 agtcaaactattttcatagaagttataagctgttttcataggctattttgaagagcttatggaaataagctaaaaaca 16322903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 315
Target Start/End: Complemental strand, 23902156 - 23902083
Alignment:
Q  242 aaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaaca 315  Q
    |||| ||||||||||||||||||  ||||||| | | |||||||| |||| ||||||||| |||| | ||||||    
T  23902156 aaataattttcatataagctataagttgttttcaaaagctatcttagagagcttatggaagtaagctgaaaaca 23902083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 332
Target Start/End: Original strand, 30371122 - 30371219
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcat 332  Q
    |||| ||||||| |||||||||||||||||  ||||||| ||| |  || ||||||| | ||| |||||||| | |||||| | | ||||||||||||    
T  30371122 taaactcaaattgttttcatataagctataagttgttttcataagacattttggagagcgtattgaaataagctgaaaacaacttatggacatgtcat 30371219  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 328
Target Start/End: Complemental strand, 12564957 - 12564877
Alignment:
Q  248 ttttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatg 328  Q
    |||||||||||||||||  ||||||| ||| ||||||||  ||  |||| ||||||||| | |||||||| | ||||||||    
T  12564957 ttttcatataagctataagttgttttcataagctatcttttagtgcttacggaaataagctgaaaacagcttatggacatg 12564877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 25005891 - 25005831
Alignment:
Q  237 aagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttat 297  Q
    ||||||| || |||||||||||||||||  ||||||| ||| |||||| |||||| |||||    
T  25005891 aagtcaacttgttttcatataagctataagttgttttcataagctatcctggagagcttat 25005831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 27820414 - 27820362
Alignment:
Q  254 tataagctatattttgtttttataggctatcttggagatcttatggaaataag 306  Q
    ||||||||||||  |||||||||| |||||||||||||  ||||| |||||||    
T  27820414 tataagctatatgctgtttttataagctatcttggagaatttatgaaaataag 27820362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 335
Target Start/End: Original strand, 30257657 - 30257757
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||||||| | ||| |||||||||| ||  ||||||| |||  ||||| |||||  ||||| |||||||| | |||||||| | || |||||||||||    
T  30257657 taaagtcaaactgtttccatataagctttaagttgttttcataaactatcctggagggcttatagaaataagctgaaaacagcttatgaacatgtcataa 30257756  T
Q  335 a 335  Q
    |    
T  30257757 a 30257757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 42397697 - 42397729
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa 232  Q
    |||||||||||||||||||||||| ||||||||    
T  42397697 agtgcttatgtataagctatttctgtaacaaaa 42397729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 235 - 375
Target Start/End: Original strand, 21157742 - 21157883
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||||||| | ||||||| |||||||||   |||||| ||| |||||| || ||| |||||||||||||| | |||||||| | || | |||||||||    
T  21157742 taaagtcaaactgttttcatgtaagctataagatgttttcatatgctatcctgaagagcttatggaaataagctaaaaacagcttttgtaaatgtcataa 21157841  T
Q  335 actgttcctgtaagctctt-caaacagtttcacaagtactta 375  Q
     ||||| |||||||||||| |||||||| | |||||| ||||    
T  21157842 gctgtttctgtaagctcttccaaacagtcttacaagtgctta 21157883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 52735096 - 52735194
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    ||||||||||||| ||||||||||| ||||| |||||||  || ||||||||| ||| ||||||||||||||  ||||| | ||| ||||||||||||||    
T  52735096 taaagtcaaattactttcatataagttatatgttgttttcgtaagctatcttgaagagcttatggaaataag-ctaaaataacatatggacatgtcataa 52735194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 238 - 334
Target Start/End: Original strand, 2996550 - 2996646
Alignment:
Q  238 agtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    ||||||||| |||| ||||||| ||||  ||||||| ||| ||||||||||||| | |||| ||||||||| |||| ||| | ||||||||||||||    
T  2996550 agtcaaattgtttttatataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataa 2996646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 49219113 - 49219193
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaaca 315  Q
    ||||||||||||||||||||||||||||||  ||||||| |||  |||||||  |||  ||||||||||||| | ||||||    
T  49219113 taaagtcaaattattttcatataagctataagttgttttcataaactatcttaaagagattatggaaataagctgaaaaca 49219193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 200 - 352
Target Start/End: Complemental strand, 30207706 - 30207550
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaaagtaaagt----caaattattttcatataagctatattttgtttttataggctatcttggagatctt 295  Q
    |||||||||||||| | || |||| ||||||||| |||| |    |||| | |||||||||||||||||  ||||||| ||| |||| ||| ||||  ||    
T  30207706 agtgcttatgtatatgttagttctataacaaaaaataaaataaatcaaactgttttcatataagctataagttgttttcataagctaccttagagagatt 30207607  T
Q  296 atggaaataagtttaaaacagcatgtggacatgtcataaactgttcctgtaagctct 352  Q
    ||||||||||| | |||||||| |   |||||||||||  |||||| | ||||||||    
T  30207606 atggaaataagctgaaaacagcttacagacatgtcatatgctgttcttataagctct 30207550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 55437415 - 55437354
Alignment:
Q  205 ttatgtataagctatttctttaacaa---aaagtaaagtcaaattattttcatataagctat 263  Q
    |||| |||||||||||||| ||||||   ||| |||||||||||||||||||||||||||||    
T  55437415 ttatctataagctatttctataacaatataaaataaagtcaaattattttcatataagctat 55437354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 340
Target Start/End: Original strand, 23819066 - 23819168
Alignment:
Q  238 agtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaact 337  Q
    ||||||| | |||||||||||| ||||   |||||| ||| ||||||||| ||| ||||| |||||||| | |||||| | | |||||||||||||| ||    
T  23819066 agtcaaactgttttcatataagttataacatgttttcataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataagct 23819165  T
Q  338 gtt 340  Q
    |||    
T  23819166 gtt 23819168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 28615530 - 28615568
Alignment:
Q  268 tgtttttataggctatcttggagatcttatggaaataag 306  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  28615530 tgtttttataggctatcttggagagcttatggaaataag 28615568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 375
Target Start/End: Complemental strand, 27123397 - 27123307
Alignment:
Q  286 tggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgttcctgtaagctct-tcaaacagtttcacaagtactta 375  Q
    |||||| |||||||||||||||| |||||| | |   ||||||||||||  |||| |  |||||||| ||||||||| |||||||||||||    
T  27123397 tggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtactta 27123307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 229 - 315
Target Start/End: Complemental strand, 28300401 - 28300315
Alignment:
Q  229 aaaaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaaca 315  Q
    ||||| |||||| ||||| ||||  |||||||||||   | |||| ||||||||||||| ||| |||||| ||||||||| ||||||    
T  28300401 aaaaaataaagttaaattgtttttgtataagctataaactattttcataggctatcttgaagagcttatgaaaataagttgaaaaca 28300315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 2980607 - 2980574
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaaa 233  Q
    |||||||||||||||||||||||| |||||||||    
T  2980607 agtgcttatgtataagctatttctataacaaaaa 2980574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 264
Target Start/End: Original strand, 4071856 - 4071885
Alignment:
Q  235 taaagtcaaattattttcatataagctata 264  Q
    ||||||||||||||||||||||||||||||    
T  4071856 taaagtcaaattattttcatataagctata 4071885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 264
Target Start/End: Original strand, 8130148 - 8130177
Alignment:
Q  235 taaagtcaaattattttcatataagctata 264  Q
    ||||||||||||||||||||||||||||||    
T  8130148 taaagtcaaattattttcatataagctata 8130177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 334
Target Start/End: Original strand, 11264285 - 11264374
Alignment:
Q  245 ttattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||| |||||||| | ||||  ||||||| ||| || ||| | |||| |||||||||||||||| |||||||  | ||||||||||||||    
T  11264285 ttatattcatatatgttataagttgttttcataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtcataa 11264374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 334
Target Start/End: Complemental strand, 20936323 - 20936226
Alignment:
Q  237 aagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||||||| |||| |||||| |||||  ||||||| |||  ||||| ||||||  ||||||||||||| | |||||||| | || |||| ||||||    
T  20936323 aagtcaaattgtttttatataatctataggttgttttcatattctatcctggagagattatggaaataaggtgaaaacagcttatgaacatatcataa 20936226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 264
Target Start/End: Original strand, 24091437 - 24091466
Alignment:
Q  235 taaagtcaaattattttcatataagctata 264  Q
    ||||||||||||||||||||||||||||||    
T  24091437 taaagtcaaattattttcatataagctata 24091466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 30581771 - 30581702
Alignment:
Q  237 aagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataag 306  Q
    |||||||| ||||||| |||||||||||   |||||| ||| | |||||||||||  |||||||||||||    
T  30581771 aagtcaaactattttcgtataagctataagctgttttaataagttatcttggagagtttatggaaataag 30581702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 51197612 - 51197539
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagctatattttgtttt 273  Q
    |||||||||||||||   |||||| | ||||||| |||| ||||| ||| |||||||||||||||  |||||||    
T  51197612 agtgcttatgtataaaacatttctgtgacaaaaaataaattcaaactatattcatataagctatacattgtttt 51197539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 1965950 - 1966014
Alignment:
Q  270 tttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||||| |||||| | || ||||| |||||||||||| |||||||| | || |||||||||||    
T  1965950 tttttataagctatcctagaaatcttctggaaataagttaaaaacagcttatgaacatgtcataa 1966014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 4191673 - 4191705
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa 232  Q
    |||||||||||||||||||||||| ||||||||    
T  4191673 agtgcttatgtataagctatttctataacaaaa 4191705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 4798630 - 4798566
Alignment:
Q  267 ttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtca 331  Q
    ||||||| ||| ||||||||||||| |||||| ||||||| | |||||||| | || ||||||||    
T  4798630 ttgttttcataagctatcttggagagcttatgcaaataagctcaaaacagcttatgtacatgtca 4798566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 6987802 - 6987738
Alignment:
Q  270 tttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    ||||| || |||||| |||||| |||||||||||||||| |||| ||  | ||||||||||||||    
T  6987802 tttttttacgctatcctggagagcttatggaaataagttgaaaatagtttatggacatgtcataa 6987738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 10192258 - 10192337
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaaca 315  Q
    |||||||||||| |||||||||||| ||||  ||||||| | | |||||| |||||| | |||| ||||||||| ||||||    
T  10192258 taaagtcaaattgttttcatataagttataagttgttttcaaaagctatcctggagagc-tatgaaaataagttgaaaaca 10192337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 261
Target Start/End: Complemental strand, 22684650 - 22684586
Alignment:
Q  202 tgcttatgtataagctatttctttaacaaa-----aagtaaagtcaaattattttcatataagct 261  Q
    ||||| |||||||||||||||| |||||||     || |||||||||||| ||||||||||||||    
T  22684650 tgcttctgtataagctatttctataacaaacggtaaaataaagtcaaattgttttcatataagct 22684586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 25487679 - 25487643
Alignment:
Q  202 tgcttatgtataagctatttctttaacaaaaagtaaa 238  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  25487679 tgcttatgtataagctatttctataacaaaaaataaa 25487643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 36823939 - 36823998
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagc 260  Q
    |||| ||||||||||||||||||| ||| | ||| |||| ||||||| |||||||||||||    
T  36823939 agtgattatgtataagctatttctataatataaa-taaaatcaaattgttttcatataagc 36823998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 38346075 - 38346011
Alignment:
Q  242 aaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataag 306  Q
    ||||||||||| |||||| |||||  |||||| ||||||||||||||| |  ||||| |||||||    
T  38346075 aaattattttcgtataagatatatgatgttttcataggctatcttggataggttatgtaaataag 38346011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 44638269 - 44638213
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggaga 291  Q
    |||||| ||||||  |||||||||||||||  |||||| |||| |||||||||||||    
T  44638269 taaagttaaattacattcatataagctataagttgtttgtataagctatcttggaga 44638213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 47970252 - 47970284
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa 232  Q
    |||||||||||||||||||||||| ||||||||    
T  47970252 agtgcttatgtataagctatttctataacaaaa 47970284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 367
Target Start/End: Original strand, 52754587 - 52754706
Alignment:
Q  248 ttttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgttcctgtaa 347  Q
    |||||| ||||||||||   |||||| ||| ||||| | ||| |||||| ||||||||| | ||| |||| | |||||| |||||||||||||    |||    
T  52754587 ttttcacataagctataagctgttttcataagctatttcggaaatctta-ggaaataagctgaaagcagcttatggacacgtcataaactgttttcataa 52754685  T
Q  348 gctctt-caaacagtttcaca 367  Q
    |||||| ||||||||||||||    
T  52754686 gctcttccaaacagtttcaca 52754706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 205 - 340
Target Start/End: Original strand, 21367611 - 21367747
Alignment:
Q  205 ttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaata 304  Q
    ||||||||||| ||| ||| || |||||| |||||| ||||| ||||| |||||  ||||  ||||||| ||| ||||||||||||| |||||| |||||    
T  21367611 ttatgtataagatatctctatagcaaaaaataaagttaaattgttttcgtataatgtataagttgttttcataagctatcttggagaacttatgaaaata 21367710  T
Q  305 agtttaaaacagcatgtggac-atgtcataaactgtt 340  Q
    || | |||||||| |||| || ||||||||| |||||    
T  21367711 agctgaaaacagcttgtgaacaatgtcataagctgtt 21367747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 37273105 - 37273207
Alignment:
Q  235 taaagtcaaattattttcatataagctatattt---tgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtca 331  Q
    |||||||||||| |||| ||||||| |||| |    |||||| ||| ||||||||||||| |||||||||||||||| |||||| | | |||||||||||    
T  37273105 taaagtcaaattgtttttatataagatataataaactgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtca 37273204  T
Q  332 taa 334  Q
    |||    
T  37273205 taa 37273207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 204 - 291
Target Start/End: Original strand, 20669562 - 20669649
Alignment:
Q  204 cttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggaga 291  Q
    |||||||||||||||||||| |||||||||   |||| ||||| ||||||||||||||||| || ||||| |||  ||||||| ||||    
T  20669562 cttatgtataagctatttctataacaaaaatacaagttaaattgttttcatataagctataattcgttttcataaactatcttagaga 20669649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 209 - 340
Target Start/End: Original strand, 50952277 - 50952412
Alignment:
Q  209 gtataagctatttctttaacaaa----aagtaaagtcaaattattttcatataagctatatt-ttgtttttataggctatcttggagatcttatggaaat 303  Q
    ||||||||||||||| |||||||    || |||||| || || ||||||||||||||||||  ||||| | |||  |||||||||||| |||||||||||    
T  50952277 gtataagctatttctataacaaaggataaataaagttaa-ttgttttcatataagctatatagttgttgtaataaactatcttggagagcttatggaaat 50952375  T
Q  304 aagtttaaaacagcatgtggacatgtcataaactgtt 340  Q
    ||| |||||||||  | || ||||||||||| |||||    
T  50952376 aagcttaaaacagtttatgaacatgtcataagctgtt 50952412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 200 - 352
Target Start/End: Complemental strand, 20192742 - 20192585
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa-----agtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatct 294  Q
    |||||||||||||||||||||| | ||||||||     | ||||||||||   ||||||||||| |||||   ||||||| ||   |||   ||||| ||    
T  20192742 agtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctataagctgtttttgtaacttattcgggagagct 20192643  T
Q  295 tatggaaataagtttaaaacagcatgtggacatgtcataaactgttcctgtaagctct 352  Q
    ||||||||| |||| |||||||| | |||||||||||||| ||||| || ||||||||    
T  20192642 tatggaaatgagttgaaaacagcttatggacatgtcataagctgtttctataagctct 20192585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 51510295 - 51510218
Alignment:
Q  229 aaaaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataag 306  Q
    |||||||||||| |||||||||| |||||| |||||  ||||||| ||| | |||| |||||| ||||||||||||||    
T  51510295 aaaaagtaaagtaaaattattttgatataaactataagttgttttcataagttatcgtggagagcttatggaaataag 51510218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 1395605 - 1395673
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa-----agtaaagtcaaattattttcatataagctat 263  Q
    ||||| |||||||||||||||||| ||||||||     | |||||||||||||||||||||||||||||    
T  1395605 agtgcatatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagctat 1395673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 200 - 334
Target Start/End: Complemental strand, 44374780 - 44374642
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa-----agtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatct 294  Q
    |||||||||||||||||||| ||||||||||||     | |||||||||||| |||||||| || ||| | |||||||   || | ||||||||||| ||    
T  44374780 agtgcttatgtataagctatatctttaacaaaagataaaataaagtcaaattgttttcatacaatctaaaatttgtttcg-taagatatcttggagagct 44374682  T
Q  295 tatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
     ||||||||||| | |||| ||| | || |||||||||||    
T  44374681 aatggaaataaggtgaaaatagcttatgtacatgtcataa 44374642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 340
Target Start/End: Original strand, 45541552 - 45541650
Alignment:
Q  242 aaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgtt 340  Q
    ||||||||||| ||||||||||| ||| |||| ||| ||||||||||| | ||||||  |||||  | |||||||| | || ||||||||||| |||||    
T  45541552 aaattattttcgtataagctatagtttattttcataagctatcttggataacttatgagaataacctgaaaacagcttatgaacatgtcataagctgtt 45541650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 244 - 313
Target Start/End: Original strand, 901907 - 901976
Alignment:
Q  244 attattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaa 313  Q
    |||||||| ||||| | |||| |||||||||||| ||||| ||||||| |||||| ||||||||| ||||    
T  901907 attatttttatatatgttatactttgtttttataagctatattggagaacttatgaaaataagttgaaaa 901976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 24085421 - 24085352
Alignment:
Q  248 ttttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagc 317  Q
    |||||| |||||||||| ||||||||| || ||||||||||||| ||| || ||||||| | ||||||||    
T  24085421 ttttcacataagctataatttgtttttgtaagctatcttggagaacttgtgaaaataagctgaaaacagc 24085352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 334
Target Start/End: Original strand, 21574465 - 21574563
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||| ||||| ||| |||||||||||||  || |||||||| |||| | |||||| |||||||||||||| | ||| |||| | || |||||||||||    
T  21574465 taaagttaaattgtttacatataagctataactt-tttttataagctaacatggagagcttatggaaataagctaaaagcagcttatgaacatgtcataa 21574563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 52323960 - 52323890
Alignment:
Q  267 ttgtttttataggctatcttggagatcttatg--gaaataagtttaaaacagcatgtggacatgtcataaa 335  Q
    ||||||| ||| ||||||||||||| ||||||  |||||||||| |||||||| | ||||| |||||||||    
T  52323960 ttgttttgataagctatcttggagagcttatgtggaaataagttgaaaacagcttatggacgtgtcataaa 52323890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 202 - 283
Target Start/End: Original strand, 41056978 - 41057060
Alignment:
Q  202 tgcttatgtataagctatttctttaacaaaaag-taaagtcaaattattttcatataagctatattttgtttttataggctat 283  Q
    |||||| ||||||||||||||||||  |||||| |||| | || || |||||||||||||||||  ||||||| ||| |||||    
T  41056978 tgcttaagtataagctatttctttagaaaaaagataaaattaatttgttttcatataagctataagttgttttcataagctat 41057060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 42039093 - 42039131
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaaagtaaa 238  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  42039093 agtgcttatgtataagctatttctgtaacaaaaaataaa 42039131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 354
Target Start/End: Complemental strand, 1217894 - 1217777
Alignment:
Q  237 aagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaac 336  Q
    |||| ||||| ||||||| |||| ||||   |||||| ||| |||||| | |||| |||||| || |||| | |||||| | | |||||||||||||| |    
T  1217894 aagttaaattgttttcatgtaagttataagctgttttcataagctatccttgagaacttatgaaagtaagatgaaaacaacttatggacatgtcataagc 1217795  T
Q  337 tgttcctgtaagctcttc 354  Q
    |||| | |||||||||||    
T  1217794 tgtttccgtaagctcttc 1217777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 308
Target Start/End: Original strand, 5436229 - 5436306
Alignment:
Q  231 aaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtt 308  Q
    ||||||||||  |||| |||||||||||| | |||  |||||| |||| |||||||||||| | |||| |||||||||    
T  5436229 aaagtaaagtttaattgttttcatataagttgtatgctgttttcatagactatcttggagaacatatgaaaataagtt 5436306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 14548804 - 14548735
Alignment:
Q  248 ttttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagc 317  Q
    |||||||||||||||||  ||||||| ||| | |||  |||||| |||||||||||||| | ||||||||    
T  14548804 ttttcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagc 14548735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 340
Target Start/End: Original strand, 36139852 - 36139957
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||||||| |  |||| |||||||||||  ||||||   ||  |||||||| ||| |||||| ||||||| | |||||||| |||| |||||||||||    
T  36139852 taaagtcaaactgatttcgtataagctataagttgtttcattatactatcttgaagagcttatgaaaataagctgaaaacagcttgtgaacatgtcataa 36139951  T
Q  335 actgtt 340  Q
     |||||    
T  36139952 gctgtt 36139957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 37689484 - 37689451
Alignment:
Q  231 aaagtaaagtcaaattattttcatataagctata 264  Q
    |||||||||| |||||||||||||||||||||||    
T  37689484 aaagtaaagttaaattattttcatataagctata 37689451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 2318623 - 2318699
Alignment:
Q  240 tcaaattattttcatataagctatattttgtttttataggcta-tcttggagatcttatggaaataagtttaaaaca 315  Q
    ||||||| ||||||||||| |||||  ||||||||||| | || ||||||||| ||||| |||||||| | ||||||    
T  2318623 tcaaattgttttcatataaactataagttgtttttataagttattcttggagagcttatagaaataagctgaaaaca 2318699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 19679424 - 19679368
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggaga 291  Q
    |||||||||| | ||||| |||||||||||  |||||||||||  ||||||||||||    
T  19679424 taaagtcaaactgttttcttataagctataagttgtttttataaactatcttggaga 19679368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 235 - 335
Target Start/End: Complemental strand, 24235779 - 24235680
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||||||| |||||  ||||||||||||  ||||||| ||| ||||| |||| ||  || || ||||||| | ||||||||||  |||||||||||||    
T  24235779 taaagtcaaactatttgaatataagctataagttgttttcataagctatattgg-gacgttgtgtaaataagctgaaaacagcataaggacatgtcataa 24235681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 334
Target Start/End: Complemental strand, 30574045 - 30573911
Alignment:
Q  203 gcttatgtataagctatttctttaacaa---aaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatgg 299  Q
    ||||||||||||||||||||| ||| ||   ||| |||||| || || ||||  ||||| ||||||  |||||| ||| ||||||||||||| || |||     
T  30574045 gcttatgtataagctatttctataaaaagataaaataaagttaagttttttttttataatctatatgatgttttcataagctatcttggagagctgatga 30573946  T
Q  300 aaataagtttaaaacagcatgtggacatgtcataa 334  Q
    | ||||| | |||||||| | || ||||| |||||    
T  30573945 acataagctgaaaacagcttatgaacatgccataa 30573911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 41028987 - 41028955
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa 232  Q
    |||||||||||||||||||||||| ||||||||    
T  41028987 agtgcttatgtataagctatttctataacaaaa 41028955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 236 - 340
Target Start/End: Original strand, 5088823 - 5088931
Alignment:
Q  236 aaagtcaaattattttcatataagctatat----tttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtca 331  Q
    ||||||||||||||||||||||||||||||     ||||||| | | || ||| |||||| ||||| |||||||||| |||||||| | ||||||||| |    
T  5088823 aaagtcaaattattttcatataagctatatataagttgttttcacaagcgatcctggagagcttattgaaataagttgaaaacagcttatggacatgtta 5088922  T
Q  332 taaactgtt 340  Q
    |||||||||    
T  5088923 taaactgtt 5088931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 13652149 - 13652271
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa-----agtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatct 294  Q
    |||||||||||||||||||||||| || |||||     | | |||| ||||| |||||||||||| ||||  ||||||||||| |||||  |||||| ||    
T  13652149 agtgcttatgtataagctatttctatagcaaaagatggaatgaagtgaaattgttttcatataagttataaattgtttttataagctattctggagagct 13652248  T
Q  295 tatggaaataagtttaaaacagc 317  Q
    || ||||||||||  ||||||||    
T  13652249 taaggaaataagtagaaaacagc 13652271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 13710792 - 13710914
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa-----agtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatct 294  Q
    |||||||||||||||||||||||| || |||||     | | |||| ||||| |||||||||||| ||||  ||||||||||| |||||  |||||| ||    
T  13710792 agtgcttatgtataagctatttctatagcaaaagatggaatgaagtgaaattgttttcatataagttataaattgtttttataagctattctggagagct 13710891  T
Q  295 tatggaaataagtttaaaacagc 317  Q
    || ||||||||||  ||||||||    
T  13710892 taaggaaataagtagaaaacagc 13710914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 305
Target Start/End: Original strand, 29973015 - 29973125
Alignment:
Q  200 agtgcttatgtataagctatttctttaaca-----aaaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatct 294  Q
    ||||||||| ||||||||||||||||||||      ||| |||||||||| |||||||| ||||||||||  ||||||| ||| |||||| | ||||  |    
T  29973015 agtgcttatatataagctatttctttaacacaaggtaaaataaagtcaaactattttcacataagctataagttgttttcataagctatccttgagagtt 29973114  T
Q  295 tatggaaataa 305  Q
    |||||||||||    
T  29973115 tatggaaataa 29973125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 9836954 - 9836877
Alignment:
Q  231 aaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtt 308  Q
    |||||||||||||| |||||||||||||| || |   |||||| ||| ||||||||||||| ||||||||||| ||||    
T  9836954 aaagtaaagtcaaactattttcatataagttacaacctgttttcataagctatcttggagagcttatggaaatgagtt 9836877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 237 - 334
Target Start/End: Original strand, 12361168 - 12361265
Alignment:
Q  237 aagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||||||| |||||||||||||||||   |||||| ||| | |||   ||||| || ||||||||||||| |||||||| | ||||||||||||||    
T  12361168 aagtcaaattgttttcatataagctataagctgttttcataagttattcaggagagctaatggaaataagttgaaaacagcttatggacatgtcataa 12361265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 202 - 333
Target Start/End: Complemental strand, 28769473 - 28769337
Alignment:
Q  202 tgcttatgtataagctatttctttaacaaa-----aagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatctta 296  Q
    ||||||||||||||||||| || |||||||     || | |||||||| ||||||| |||||||||||   |||||| ||| ||||| |||||||  |||    
T  28769473 tgcttatgtataagctattcctataacaaactataaaattaagtcaaactattttcttataagctataagctgttttcataagctattttggagagttta 28769374  T
Q  297 tggaaataagtttaaaacagcatgtggacatgtcata 333  Q
    |||||||||| | |||||| | | ||||||| |||||    
T  28769373 tggaaataagctgaaaacaacttatggacatatcata 28769337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 5290575 - 5290641
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagctatatt 266  Q
    |||||||||||||||||||||||| ||||||| |  | ||||||| | ||||||| |||||||||||    
T  5290575 agtgcttatgtataagctatttctataacaaataaaatagtcaaactgttttcatgtaagctatatt 5290641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 43504758 - 43504807
Alignment:
Q  268 tgtttttataggctatcttggagatcttatggaaataagtttaaaacagc 317  Q
    |||||||||| ||||||||||||| |||||||||||||| | ||||||||    
T  43504758 tgtttttataagctatcttggagaacttatggaaataagctgaaaacagc 43504807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 1561213 - 1561297
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagctatattttgtttttataggctatc 284  Q
    |||||||||||||||| ||||||| |||| |||  |||| ||||||| |||| |||||||||| |  ||||||| ||| ||||||    
T  1561213 agtgcttatgtataagttatttctataacgaaagataaactcaaattgttttaatataagctacaagttgttttcataagctatc 1561297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 8536184 - 8536123
Alignment:
Q  200 agtgcttatgtataagctatttctttaaca----aaaagtaaagtcaaattattttcatata 257  Q
    |||||||||||||||||||||||| |||||    |||||| |||||||||| ||||||||||    
T  8536184 agtgcttatgtataagctatttctataacaaaataaaagtgaagtcaaattgttttcatata 8536123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 337
Target Start/End: Original strand, 24558829 - 24558929
Alignment:
Q  237 aagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaac 336  Q
    |||| ||||||||||| |||||||||||  ||||||| ||| |||||||||||||  | ||| ||||||||| || | ||| | || || ||||||||||    
T  24558829 aagttaaattattttcgtataagctataagttgttttcataagctatcttggagacttaatgtaaataagttgaacatagcttatgaacgtgtcataaac 24558928  T
Q  337 t 337  Q
    |    
T  24558929 t 24558929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 250 - 334
Target Start/End: Complemental strand, 39551290 - 39551206
Alignment:
Q  250 ttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||| ||||||||  ||||||| ||| ||| || |||||| |||||  ||||||||| |||||||| | ||||||||||||||    
T  39551290 ttcatacaagctataagttgttttcataagctttcctggagagcttataaaaataagttaaaaacagcttttggacatgtcataa 39551206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 200 - 263
Target Start/End: Complemental strand, 40868271 - 40868205
Alignment:
Q  200 agtgcttatgtataagctatttcttta---acaaaaagtaaagtcaaattattttcatataagctat 263  Q
    |||||||||||||||||||||||| ||   | ||||| ||||||| |||| ||||||||||||||||    
T  40868271 agtgcttatgtataagctatttctgtaaataaaaaaaataaagtcgaattgttttcatataagctat 40868205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 42597456 - 42597511
Alignment:
Q  279 gctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    ||||||||||| | |||||||||||||||| |||||||| | | ||||||||||||    
T  42597456 gctatcttggataacttatggaaataagttgaaaacagcttatagacatgtcataa 42597511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 235 - 306
Target Start/End: Complemental strand, 3537127 - 3537054
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttt--tataggctatcttggagatcttatggaaataag 306  Q
    |||||||||||| ||||| |||||||||||  ||||| |  |||| | ||||||||||| ||||||||||||||    
T  3537127 taaagtcaaattgttttcgtataagctataggttgttatcatataagatatcttggagaacttatggaaataag 3537054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 235 - 360
Target Start/End: Complemental strand, 6509399 - 6509273
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||||||||| | || ||||||||||||   |||||| ||| |||||| |||||| ||||| |||||||| | |||| ||  | | | ||||||||||    
T  6509399 taaagtcaaattgtatttatataagctataagctgttttcataagctatcctggagagcttattgaaataaggtgaaaatagtttataggcatgtcataa 6509300  T
Q  335 actgttcctgtaagctct-tcaaacag 360  Q
     ||||| || |||||||| ||||||||    
T  6509299 gctgtttctataagctctctcaaacag 6509273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 268 - 334
Target Start/End: Original strand, 20672757 - 20672823
Alignment:
Q  268 tgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||||||||| |||||| |||||| |||||| ||||||| | |||||||| | || |||||||||||    
T  20672757 tgtttttataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataa 20672823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 333
Target Start/End: Complemental strand, 42370496 - 42370359
Alignment:
Q  201 gtgcttatgtataagctatttctttaacaaaa-----agtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatctt 295  Q
    ||||||||||||||||| | ||| ||||||||     |||||||||||| ||||||  ||| |||||||   |||| | ||| |||||| || |||  ||    
T  42370496 gtgcttatgtataagctgtatctgtaacaaaatataaagtaaagtcaaactatttttttatgagctataaactgttctcataagctatcatgaagagttt 42370397  T
Q  296 atggaaataagtttaaaacagcatgtggacatgtcata 333  Q
    ||||||||||| | |||||||  ||| |||||||||||    
T  42370396 atggaaataagctgaaaacagtttgtagacatgtcata 42370359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 43208331 - 43208290
Alignment:
Q  126 ctaaaaccttgtttttataaacaacttaattaagcgcttata 167  Q
    ||||| |||||||| ||||||||||||||||||| |||||||    
T  43208331 ctaaagccttgtttgtataaacaacttaattaagtgcttata 43208290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 25869327 - 25869263
Alignment:
Q  270 tttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    |||| |||||||||| ||||||  ||||||||||||| | |||||| | | ||||||||||||||    
T  25869327 ttttcataggctatcatggagagtttatggaaataagctgaaaacaacttatggacatgtcataa 25869263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 33697083 - 33697011
Alignment:
Q  205 ttatgtataagctatttctttaacaaaaagtaaagtcaaattattttcatataagctatattttgtttttata 277  Q
    |||| |||||||||||||| ||||||||  |||||||||||| || | |||||| |||||   ||||||||||    
T  33697083 ttatatataagctatttctataacaaaagataaagtcaaattgttctgatataatctataaactgtttttata 33697011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 315
Target Start/End: Complemental strand, 38036248 - 38036128
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaaagtaaagt-----caaattattttcatataagctatattttgtttttataggctatcttggagatct 294  Q
    ||||||||||||||| |||||| ||||||||||| |||| |     |||||| ||||  | |||||||||   |||||| ||  ||||||||||||| ||    
T  38036248 agtgcttatgtataaactatttatttaacaaaaaataaaataaattcaaattgtttttgtgtaagctataaactgttttgattagctatcttggagagct 38036149  T
Q  295 tatggaaataagtttaaaaca 315  Q
    ||| |||||||| | ||||||    
T  38036148 tattgaaataagctgaaaaca 38036128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 198 - 298
Target Start/End: Complemental strand, 34117671 - 34117569
Alignment:
Q  198 ttagtgcttatgtataagctatttctttaacaaaaagtaaagtca--aattattttcatataagctatattttgtttttataggctatcttggagatctt 295  Q
    |||||||||||||||||| ||||||||||||||||  |||| | |   ||||||| |||||||||||||  ||| ||| ||| ||||||||||||| |||    
T  34117671 ttagtgcttatgtataagttatttctttaacaaaagataaaataaggtattatttacatataagctataagttgctttcataagctatcttggagagctt 34117572  T
Q  296 atg 298  Q
    |||    
T  34117571 atg 34117569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 34205209 - 34205265
Alignment:
Q  231 aaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttg 287  Q
    ||||||||||||||||||||| ||||||||||||  ||||||| ||| |||||||||    
T  34205209 aaagtaaagtcaaattatttttatataagctataagttgttttcataagctatcttg 34205265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 300
Target Start/End: Complemental strand, 38047986 - 38047886
Alignment:
Q  205 ttatgtataagctatttctttaacaaaa-----agtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatgg 299  Q
    ||||||||||||||| ||| ||||||||     | |||||||||||||||||||||||  ||||||  |||||| ||| |||||| |||||| |||||||    
T  38047986 ttatgtataagctatatctctaacaaaagataaaataaagtcaaattattttcatatatactatatgctgttttcataagctatcctggagagcttatgg 38047887  T
Q  300 a 300  Q
    |    
T  38047886 a 38047886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 200 - 306
Target Start/End: Complemental strand, 31030264 - 31030155
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaa---aagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatctta 296  Q
    |||||||||||||||||||||| | |||||||   || ||||||||| || || ||||||||||||||  | |||||  || ||| || |||||| ||||    
T  31030264 agtgcttatgtataagctatttttataacaaatttaaataaagtcaagttgttatcatataagctataagtagttttcctaagctgtcctggagagctta 31030165  T
Q  297 tggaaataag 306  Q
    ||||||||||    
T  31030164 tggaaataag 31030155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 39105440 - 39105509
Alignment:
Q  237 aagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataag 306  Q
    |||| ||||| ||||| ||||||||||| | |||||| ||| ||||||||||||| |||||| |||||||    
T  39105440 aagttaaattgttttcgtataagctataatctgttttcataagctatcttggagaacttatgaaaataag 39105509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 354
Target Start/End: Complemental strand, 41957545 - 41957428
Alignment:
Q  237 aagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaac 336  Q
    |||| ||||| ||||||| |||| ||||   |||||| ||| |||||| | |||| |||||| ||||||| | |||||| | | |||||||||||||| |    
T  41957545 aagttaaattgttttcatgtaagttataagctgttttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatggacatgtcataagc 41957446  T
Q  337 tgttcctgtaagctcttc 354  Q
    |||| | |||||||||||    
T  41957445 tgtttccgtaagctcttc 41957428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 10772008 - 10771953
Alignment:
Q  206 tatgtataagctatttctttaacaaaaa--gtaaagtcaaattattttcatataag 259  Q
    |||||||||||||||||| |||||||||  ||||||| ||||| ||||||||||||    
T  10772008 tatgtataagctatttctataacaaaaaatgtaaagttaaattgttttcatataag 10771953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 12425545 - 12425625
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaaca 315  Q
    |||||| ||||| ||||| |||||||||||   |||||| | | ||||||||||||| |||||| ||||||||| ||||||    
T  12425545 taaagttaaattgttttcgtataagctataagctgttttcacaagctatcttggagaacttatgaaaataagttgaaaaca 12425625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 12975321 - 12975400
Alignment:
Q  235 taaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaaca 315  Q
    |||| ||||||| |||||||||||||||||   ||| || ||| ||||||||||||| ||||||| |||||||| ||||||    
T  12975321 taaaatcaaattgttttcatataagctataagctgtgttcataagctatcttggagagcttatgg-aataagttgaaaaca 12975400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 17368682 - 17368749
Alignment:
Q  267 ttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataa 334  Q
    ||||||| ||| |||||||||||||  ||||||||||||| | ||||| |||| || |||||||||||    
T  17368682 ttgttttcataagctatcttggagaggttatggaaataagctgaaaactgcatatgaacatgtcataa 17368749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 26005080 - 26005013
Alignment:
Q  248 ttttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaaca 315  Q
    ||||| ||||||||||||  |||||| ||| |||| |||||||| |||||||||||||| | ||||||    
T  26005080 ttttcgtataagctatatactgttttcataagctagcttggagagcttatggaaataaggtgaaaaca 26005013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 230 - 340
Target Start/End: Complemental strand, 4273478 - 4273368
Alignment:
Q  230 aaaagtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgt 329  Q
    |||| |||||||||||| |||| | |||||||||| | |||||||| | | |||||| |||| ||||| | |||||||| |||||| | | | |||| ||    
T  4273478 aaaaataaagtcaaattgttttaaaataagctataatctgtttttacacggtatctttgagagcttatagcaataagttgaaaacaacttatagacaagt 4273379  T
Q  330 cataaactgtt 340  Q
    ||||| |||||    
T  4273378 cataagctgtt 4273368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 10272525 - 10272447
Alignment:
Q  237 aagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaaca 315  Q
    |||||||||| ||||| |||||||||||  ||||||| ||| || ||||||||||  ||||| ||||||| | ||||||    
T  10272525 aagtcaaattgttttcgtataagctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaaca 10272447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 251 - 340
Target Start/End: Original strand, 10391331 - 10391421
Alignment:
Q  251 tcatataagctatattttgtttttataggctatcttggaga-tcttatggaaataagtttaaaacagcatgtggacatgtcataaactgtt 340  Q
    |||||||||||||| |||||||||||| |||||| | |||| | ||| ||||||||||| |||||| |   | ||||||||||||| ||||    
T  10391331 tcatataagctataatttgtttttataagctatcctagagagttttaaggaaataagttgaaaacaactaatagacatgtcataaagtgtt 10391421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 315
Target Start/End: Complemental strand, 18704167 - 18704052
Alignment:
Q  204 cttatgtataagctatttctttaacaaaa----agtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatgg 299  Q
    |||||||||||| ||||||| ||||||||    | |||||||||  |||||| ||||||||||||  ||||||| ||| |||||     |||||||||||    
T  18704167 cttatgtataagttatttctataacaaaagataaataaagtcaagctatttttatataagctataagttgttttcataagctattacaaagatcttatgg 18704068  T
Q  300 aaataagtttaaaaca 315  Q
    ||||||| | ||||||    
T  18704067 aaataagctgaaaaca 18704052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 33533591 - 33533533
Alignment:
Q  279 gctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaact 337  Q
    ||||||||||||| |||||||||||||||| |||||| | | || | ||||||||||||    
T  33533591 gctatcttggagagcttatggaaataagttgaaaacaacttatgaatatgtcataaact 33533533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 306
Target Start/End: Original strand, 29588814 - 29588924
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaaagtaaagt----caaattattttcatataagctatattttgtttttataggctatcttggagatctt 295  Q
    |||||||||||||||||||||||| ||||||||  |||| |     ||||| |||||||||||||||||   ||||||  || ||||| ||| |||  ||    
T  29588814 agtgcttatgtataagctatttctataacaaaatataaaataatgaaaattgttttcatataagctataaagtgttttcgtaagctatgttgaagagttt 29588913  T
Q  296 atggaaataag 306  Q
    |||||||||||    
T  29588914 atggaaataag 29588924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 31723824 - 31723897
Alignment:
Q  280 ctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgttcctgtaagctctt 353  Q
    |||||||||||| |||| ||||| ||| |||||||||| | |||||||| || || ||||||  ||||||||||    
T  31723824 ctatcttggagaccttacggaaaaaagcttaaaacagcttatggacatgacacaagctgttcgcgtaagctctt 31723897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 32408682 - 32408617
Alignment:
Q  241 caaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataag 306  Q
    ||||||||||||||||||||||||   | |||| ||| |||||| || ||| ||||||||||||||    
T  32408682 caaattattttcatataagctataaactattttcataagctatcctgaagagcttatggaaataag 32408617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 35135798 - 35135729
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa-----agtaaagtcaaattattttcatataagctata 264  Q
    |||| ||||||||||| ||||||| ||||||||     | |||||||||| |||||||||||||||||||    
T  35135798 agtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctata 35135729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 35553282 - 35553213
Alignment:
Q  237 aagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaataag 306  Q
    |||||||||| |||||||||||||||||   | |||| ||| |||||  |||||| ||||||||||||||    
T  35553282 aagtcaaattcttttcatataagctataaactattttcatacgctattctggagagcttatggaaataag 35553213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 37588443 - 37588374
Alignment:
Q  248 ttttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagc 317  Q
    |||||||||||||||||  ||||||| ||| | |||  |||||| |||||||||||||| | ||||||||    
T  37588443 ttttcatataagctataagttgttttcataagttattctggagagcttatggaaataagctgaaaacagc 37588374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 912737 - 912677
Alignment:
Q  242 aaattattttcatataagctatattttgtttttataggctatcttggagatcttatggaaa 302  Q
    ||||| ||||||||||||| |||  |||||||||||  |||||||||| | ||||||||||    
T  912737 aaattgttttcatataagcaataagttgtttttataaactatcttggaaagcttatggaaa 912677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 5563648 - 5563699
Alignment:
Q  210 tataagctatttctttaacaaaaagtaaagtcaaattattttcatataagcta 262  Q
    |||||||||||||| ||||||||  |||| | |||||||||||||||||||||    
T  5563648 tataagctatttctataacaaaagataaaat-aaattattttcatataagcta 5563699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 7096263 - 7096231
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa 232  Q
    |||||||||||||||||||||||| ||||||||    
T  7096263 agtgcttatgtataagctatttctataacaaaa 7096231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 13224363 - 13224395
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaaaa 232  Q
    |||||||||||||||||||||||| ||||||||    
T  13224363 agtgcttatgtataagctatttctataacaaaa 13224395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 340
Target Start/End: Complemental strand, 13604932 - 13604840
Alignment:
Q  248 ttttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgtt 340  Q
    ||||||||||| || ||   |||||| ||| | ||||||| ||| |||||| ||||||||| |||||| | | |||||||||||||| |||||    
T  13604932 ttttcatataaactttaagctgttttcataagttatcttgaagagcttatgaaaataagttgaaaacaacgtatggacatgtcataagctgtt 13604840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 340
Target Start/End: Complemental strand, 21768280 - 21768188
Alignment:
Q  248 ttttcatataagctatattttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtcataaactgtt 340  Q
    ||||||||||| || ||   |||||| ||| | ||||||| ||| |||| | ||||||||| |||||||| | |||||||||||||| |||||    
T  21768280 ttttcatataaactttaagctgttttcataagttatcttgaagagcttacgaaaataagttgaaaacagcgtatggacatgtcataagctgtt 21768188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 331
Target Start/End: Original strand, 34690812 - 34690943
Alignment:
Q  204 cttatgtataagctatttctttaacaaaa-----agtaaagtcaaattattttcatataagctatattttgtttttataggctatcttggagatcttatg 298  Q
    |||||||||| ||||||||| ||||||||     | |||||||| | || ||||||||| ||||||  ||||| | ||| || |||||||||| ||||||    
T  34690812 cttatgtatacgctatttctataacaaaagataaaataaagtcacaatactttcatata-gctataagttgttctcataagccatcttggagagcttatg 34690910  T
Q  299 gaaataagtttaaaacagcatgtggacatgtca 331  Q
    |||||||||  | |||| | | |||||||||||    
T  34690911 gaaataagtcgataacaacttatggacatgtca 34690943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 37611279 - 37611215
Alignment:
Q  267 ttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtca 331  Q
    ||||||| ||| ||||||||||||| |||||||||||||  | |||||||| | || ||||||||    
T  37611279 ttgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtca 37611215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 37788009 - 37787945
Alignment:
Q  267 ttgtttttataggctatcttggagatcttatggaaataagtttaaaacagcatgtggacatgtca 331  Q
    ||||||| ||| ||||||||||||| |||||||||||||  | |||||||| | || ||||||||    
T  37788009 ttgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtca 37787945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 1210 - 1145
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaa-----aaagtaaagtcaaattattttcatataagc 260  Q
    |||||||||||||||||||||||| ||||||     ||| |||||||||| |||| ||||||||||    
T  1210 agtgcttatgtataagctatttctataacaaaagataaaataaagtcaaactattctcatataagc 1145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 2765 - 2830
Alignment:
Q  200 agtgcttatgtataagctatttctttaacaa-----aaagtaaagtcaaattattttcatataagc 260  Q
    |||||||||||||||||||||||| ||||||     ||| |||||||||| |||| ||||||||||    
T  2765 agtgcttatgtataagctatttctataacaaaagataaaataaagtcaaactattctcatataagc 2830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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