View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_84 (Length: 250)
Name: NF2729_high_84
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_84 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 40427093 - 40426854
Alignment:
| Q |
11 |
cacagaacagttctttccctactcaaagtccagatcaatctgttgcctcagcaacaccaccaactaaattactcaaggcttctcccaaaatcatttcatt |
110 |
Q |
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| T |
40427093 |
cacagaacagttctttccctactcaaagtccagatcaatctgttgcctcagcaacaccaccaactaaactactcaaggcttctcccaaaatcatttcatt |
40426994 |
T |
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| Q |
111 |
tgattactcgaataatgattcaaaggttaagaagcctaaaaccgagatcgggtatggtgaaaacttgaattttggaagtgtgatttctcaaggtgattat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40426993 |
tgattactcgaataatgattcaaaggttaagaagcctaaaaccgagatcgggtatggtgaaaacttgaattttggaagtgtgatttctcaaggtgattat |
40426894 |
T |
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| Q |
211 |
tataaacgagagaacaaggttgctgctgtaaatagaaacc |
250 |
Q |
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| T |
40426893 |
tataaacgagagaacaaggtttctgctgtaaatagaaacc |
40426854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 40442181 - 40441942
Alignment:
| Q |
11 |
cacagaacagttctttccctactcaaagtccagatcaatctgttgcctcagcaacaccaccaactaaattactcaaggcttctcccaaaatcatttcatt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40442181 |
cacagaacagttctttccctactcaaagtccagatcaatctgttgcctcagcaacaccaccaactaaactactcaaggcttctcccaaaatcatttcatt |
40442082 |
T |
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| Q |
111 |
tgattactcgaataatgattcaaaggttaagaagcctaaaaccgagatcgggtatggtgaaaacttgaattttggaagtgtgatttctcaaggtgattat |
210 |
Q |
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| T |
40442081 |
tgattactcgaataatgattcaaaggttaagaagcctaaaaccgagatcgggtatggtgaaaacttgaattttggaagtgtgatttctcaaggtgattat |
40441982 |
T |
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| Q |
211 |
tataaacgagagaacaaggttgctgctgtaaatagaaacc |
250 |
Q |
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| T |
40441981 |
tataaacgagagaacaaggtttctgctgtaaatagaaacc |
40441942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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