View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_85 (Length: 249)
Name: NF2729_high_85
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_85 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 34282069 - 34281832
Alignment:
| Q |
1 |
ttactgactgtaagacctttttaaaatacttttttgtccctgaaaatgggatcattgcaaatttctatatccattttttcctaagtttattattttttaa |
100 |
Q |
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| T |
34282069 |
ttactgactgtaagacctttttaaaatacttttttgtccctgaaaatgggatcattgcaaatttctatatccattttttcctaagtttattattttttaa |
34281970 |
T |
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| Q |
101 |
tattaccaatttgtattgaaatataaaaaatctacattgaatagaaataaaaaggatactgaaatatcatatgaaactagcacaaatttagcacaataat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34281969 |
tattaccaatttgtattgaaatataaaaaatctacactgaatagaaataaaaaggatactgaaatatcatatgaaactagcacaaatttagcacaataat |
34281870 |
T |
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| Q |
201 |
attgaagtgacatttgaaatgttggaacacatgttcat |
238 |
Q |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
34281869 |
attgaagtgacatttgaaatgttgggacacatgttcat |
34281832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 28175941 - 28175909
Alignment:
| Q |
97 |
ttaatattaccaatttgtattgaaatataaaaa |
129 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
28175941 |
ttaatattactaatttgtattgaaatataaaaa |
28175909 |
T |
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