View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_89 (Length: 239)
Name: NF2729_high_89
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_89 |
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Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 20952708 - 20952817
Alignment:
| Q |
1 |
tctcccaataagatcaaccatgcattcataacgctcaatcttcagtctaatcccatacac-aaccttcatcgaataaaaaacctcacaagcaaaatcaat |
99 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||| | ||||| |||||| |
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| T |
20952708 |
tctcccaataagatcaaccatgtattcataacactcaatcttcagtctaatcccatacacaaaccttcatcgaataaaaatcctcgcgagcaacatcaat |
20952807 |
T |
|
| Q |
100 |
caaacctgca |
109 |
Q |
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|||||||||| |
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| T |
20952808 |
caaacctgca |
20952817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 21009514 - 21009618
Alignment:
| Q |
1 |
tctcccaataagatcaaccatgcattcataacgctcaatcttcagtctaatcccatacacaaccttcatcgaataaaaaacctcacaagcaaaatcaatc |
100 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||||| ||||||| |
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| T |
21009514 |
tctcccaagaagatcaaccatccattcataacgctcaatcttcggtctaataccatacacgaccttcatcgaataaaaaacctcacgagcaacatcaatc |
21009613 |
T |
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| Q |
101 |
aaacc |
105 |
Q |
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||||| |
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| T |
21009614 |
aaacc |
21009618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 20950245 - 20950314
Alignment:
| Q |
35 |
tcaatcttcagtctaatcccatacacaaccttcatcgaataaaaaacctcacaagcaaaatcaatcaaac |
104 |
Q |
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| T |
20950245 |
tcaatcttcggttcaatcccattcacaaccttcatcgaacaaaaaacctcacaagcaacttcaatcaaac |
20950314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 12011179 - 12011287
Alignment:
| Q |
1 |
tctcccaataagatcaaccatgcattcataacgctcaatcttcagtctaatcccatacacaaccttcatcgaataaaaaacctcacaagcaaaatcaatc |
100 |
Q |
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|||||||| ||||||||||||||| ||||| |||||||| || | ||| |||| |||||||||||||||| |||||||||| | | | ||||||| |
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| T |
12011179 |
tctcccaagaagatcaaccatgcacccataatgctcaatcgtcggctcaattccatgcacaaccttcatcgaacaaaaaacctcgcggccgacatcaatc |
12011278 |
T |
|
| Q |
101 |
aaacctgca |
109 |
Q |
| |
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||||||||| |
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|
| T |
12011279 |
aaacctgca |
12011287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 21009876 - 21009928
Alignment:
| Q |
123 |
atcttttccccaagctcaagactcaaacattaagttgattcattcatgagggt |
175 |
Q |
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||||||||||||| | |||||||||||| |||| |||||||||||||||||| |
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| T |
21009876 |
atcttttccccaattttaagactcaaacaataagctgattcattcatgagggt |
21009928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 38183226 - 38183318
Alignment:
| Q |
17 |
accatgcattcataacgctcaatcttcagtctaatcccatacacaaccttcatcgaataaaaaacctcacaagcaaaatcaatcaaacctgca |
109 |
Q |
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|||||||| ||||| ||||||||||| || || ||||||||||||||||||||| |||||||||| | | | | |||||||||| ||||| |
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| T |
38183226 |
accatgcagccataatgctcaatcttcggttcgataccatacacaaccttcatcgaacaaaaaacctcgcgaccgacatcaatcaaatctgca |
38183318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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