View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2729_high_9 (Length: 656)
Name: NF2729_high_9
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 588; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 1 - 634
Target Start/End: Original strand, 40616853 - 40617487
Alignment:
| Q |
1 |
aaatgacgaaataacacacacaagcttaattttaccttatgcaaattaagcttagtcttattaattatatatattagccactacttgagtattctttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40616853 |
aaatgacgaaataacacacacaagcttaattttaccttatgcaaattaagcttagtcttattaattatatatattagccactacttgagtattctttcaa |
40616952 |
T |
|
| Q |
101 |
gccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaatattgttacgacaaggtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40616953 |
gccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaatattgttacgacaaggtg |
40617052 |
T |
|
| Q |
201 |
gctgacctgcatgttcatcatcacatccattcactgaatcacattggtctaccactttcgcggtcacagtcctcccgttcgacgccctaattctaataaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40617053 |
gctgacctgcatgttcatcatcacatccattcactgaatcacattggtctaccactttcgcggtcacagtcctcccgttcgacgccctaattctaataaa |
40617152 |
T |
|
| Q |
301 |
ttttccacaccttgaacctccactgtaccatccagtcgataatgccacgattctttctgagttgctatggaatatctcatcgcactgagaagcacctcct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40617153 |
ttttccacaccttgaacctccactgtaccatccagtcgataatgccacgattctttccgagttgctatggaatatctcatcgcactgagaagcacctcct |
40617252 |
T |
|
| Q |
401 |
ccgtctcctcctgttaaatatagtttgagatttattaaaattaattagttgaatattatttaaggtagttacaagtttgct-nnnnnnnnngaggtagtt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40617253 |
ccgtctcctcctgttaaatatagtttgagatttattaaaattaattatttgaatattatttaaggtagttacaagtttgctaaaaaaaaaagaggtagtt |
40617352 |
T |
|
| Q |
500 |
acaagttagttataatcacttgaaagttagttatatatgttacctgcgctaaaatcgttcaaagtgagtaatgcttgtgtgccggaggatacatagggtg |
599 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40617353 |
acaagttagttataatcacttgatagttagttatatatgttacctgcgctaaaatcgttcaaagtgagtaatgcttgtgtgccggaggatacatagggtg |
40617452 |
T |
|
| Q |
600 |
gagaacacctatattgagggtatgattgtccatcg |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
40617453 |
gagaacacctatattgagggtatgattgtccatcg |
40617487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 82 - 408
Target Start/End: Original strand, 40627646 - 40627971
Alignment:
| Q |
82 |
tacttgagtattctttcaagccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccaca |
181 |
Q |
| |
|
|||||||||| | ||| ||||||||| |||||||||||||||||||||||||| | |||||| || |||| ||| |||||||| | |||||||||||||| |
|
|
| T |
40627646 |
tacttgagtaattttt-aagccatagaccatgtaactggtactacaccatcatctgtattcaaccctaatgcattccacacagatacagatccatccaca |
40627744 |
T |
|
| Q |
182 |
atattgttacgacaaggtggctgacctgcatgttcatcatcacatccattcactgaatcacattggtctaccactttcgcggtcacagtcctcccgttcg |
281 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||| | ||||||||||||||| |||||||| ||||| ||||||||||| |||||| ||||||||||| |
|
|
| T |
40627745 |
atattgttatgacaaggtggctgacctgcgtgttccttatcacatccattcaccgaatcacactggtccaccactttcgccgtcacactcctcccgttcc |
40627844 |
T |
|
| Q |
282 |
acgccctaattctaataaattttccacaccttgaacctccactgtaccatccagtcgataatgccacgattctttctgagttgctatggaatatctcatc |
381 |
Q |
| |
|
|||| | |||||||| | ||||||||| ||||||||||| ||||||| ||||| || || ||||| | |||||| |||||| ||| || | ||||| |
|
|
| T |
40627845 |
tcgccgtgattctaatcatttttccacatcttgaacctccgttgtaccacccagtggacaaagccaccactctttccgagttgtcgtggtatttttcatc |
40627944 |
T |
|
| Q |
382 |
gcactgagaagcacctcctccgtctcc |
408 |
Q |
| |
|
||| ||||| | ||||||||||||||| |
|
|
| T |
40627945 |
gcattgagacggacctcctccgtctcc |
40627971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 96 - 276
Target Start/End: Original strand, 40610453 - 40610633
Alignment:
| Q |
96 |
ttcaagccatagtccatgtaactggtactacaccatcatttttattcagccgtaattcatcccacacagctgcagatccatccacaatattgttacgaca |
195 |
Q |
| |
|
||||||| |||| ||||||||||||||| |||||||||| |||| | || |||| ||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40610453 |
ttcaagctatagaccatgtaactggtaccacaccatcatcagtatttaaccctaatgcattccacacagctacagatccatccacaatattgttacgaca |
40610552 |
T |
|
| Q |
196 |
aggtggctgacctgcatgttcatcatcacatccattcactgaatcacattggtctaccactttcgcggtcacagtcctccc |
276 |
Q |
| |
|
||||||||| | |||||| || |||||||| ||||||||||||||||||| || ||||| ||||| |||||| ||||||| |
|
|
| T |
40610553 |
aggtggctgccatgcatgctcctcatcacaaccattcactgaatcacattcatccaccaccttcgccgtcacactcctccc |
40610633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 40610364 - 40610406
Alignment:
| Q |
21 |
caagcttaattttaccttatgcaaattaagcttagtcttatta |
63 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
40610364 |
caagcttaatttaaccttatgcaaattaagcttgttcttatta |
40610406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 596 - 626
Target Start/End: Original strand, 40628024 - 40628054
Alignment:
| Q |
596 |
ggtggagaacacctatattgagggtatgatt |
626 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
40628024 |
ggtggagaacacctatattgagggtatgatt |
40628054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 372
Target Start/End: Complemental strand, 40641337 - 40641268
Alignment:
| Q |
303 |
ttccacaccttgaacctccactgtaccatccagtcgataatgccacgattctttctgagttgctatggaa |
372 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| || | ||||| | ||||||||||| ||||||||| |
|
|
| T |
40641337 |
ttccacaccttgaacctccgttgtaccacccagtggacagcgccactactctttctgagtagctatggaa |
40641268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 474
Target Start/End: Original strand, 44565151 - 44565182
Alignment:
| Q |
443 |
aattagttgaatattatttaaggtagttacaa |
474 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
44565151 |
aattagttgaatattatttaaggtagttacaa |
44565182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University