View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_95 (Length: 237)
Name: NF2729_high_95
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_95 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 46034655 - 46034434
Alignment:
| Q |
1 |
actcatcagccataatagatacattttgggcggcacacaccacattaagtagtcgcttgttgaacactgcgtcattccgcattttccagatggtccatag |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46034655 |
actcatcagccataatagagacattttgggcggcacacaccacattaagtggtcgcttgttgaacactgcgtcattccgcattttccagatggtccatag |
46034556 |
T |
|
| Q |
101 |
agatagactaaagagttgagt-gcttgggcattagaattagataaccatttcatcatccattgagttaagttaacctgtgttggaacatgtaattcgagc |
199 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46034555 |
agatagactaaagagttgagtagcttgggcattagaattagataaccatttcatcatccattgagttaagttaacctgtgttggaacatgtaatccgagc |
46034456 |
T |
|
| Q |
200 |
ggagatgtaaaccagaaccttt |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
46034455 |
ggagatgtaaaccagaaccttt |
46034434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39488533 - 39488312
Alignment:
| Q |
1 |
actcatcagccataatagatacattttgggcggcacacaccacattaagtagtcgcttgttgaacactgcgtcattccgcattttccagatggtccatag |
100 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39488533 |
actcatcagccataatagagacattttgggcggcacacaccacattaagtggtcgcttgttgaacactgcgtcattccgcattttccagatggtccatag |
39488434 |
T |
|
| Q |
101 |
agatagactaaagagttgagt-gcttgggcattagaattagataaccatttcatcatccattgagttaagttaacctgtgttggaacatgtaattcgagc |
199 |
Q |
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| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39488433 |
aaatagactaaagagttgagtagcttgggcattagaattagataaccatttcatcatccattgagttaagttaacctgtgttggaacatgtaatccgagc |
39488334 |
T |
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| Q |
200 |
ggagatgtaaaccagaaccttt |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
39488333 |
ggagatgtaaaccagaaccttt |
39488312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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