View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_high_97 (Length: 236)
Name: NF2729_high_97
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_high_97 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 37377579 - 37377799
Alignment:
| Q |
1 |
ctccaatgggaccatggtaaatagttactcaggactgtgtgtaacagtaaagtatatagaaggtgaattttagtacatatacgtcc-ttattttagaact |
99 |
Q |
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| T |
37377579 |
ctccaatgggaccatggtaaatagttactcaggactgtgtgtaacagtaaagtatttagaaggtgaattttagtacatatacgtcccttattttagaact |
37377678 |
T |
|
| Q |
100 |
gacttattttttgagttgtataatcttccttggttttattactcataatggaaatcggacatttgtgcagcaaatgtagtttcgggtgggattcgctctt |
199 |
Q |
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| T |
37377679 |
gacttatttttttagttgtataatcttccttggttttattactcataatggaaatcggacatttgtgcagcaaatgtagtatcgggtgggattcgctctt |
37377778 |
T |
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| Q |
200 |
ggattgcaacggggagaaacg |
220 |
Q |
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| T |
37377779 |
ggattgcaacggggagaaacg |
37377799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 37384991 - 37385211
Alignment:
| Q |
1 |
ctccaatgggaccatggtaaatagttactcaggactgtgtgtaacagtaaagtatatagaaggtgaattttagtacatatacgtcctt-attttagaact |
99 |
Q |
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||||||||||||| ||||||| ||||||||||| || |||| ||||||||||||||||||||||||||||| ||||||||| |||| | ||| || |||| |
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| T |
37384991 |
ctccaatgggaccctggtaaacagttactcaggtctttgtgcaacagtaaagtatatagaaggtgaattttcgtacatatatgtccctcattctaaaact |
37385090 |
T |
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| Q |
100 |
gacttattttttgagttgtataatcttccttggttttattactcataatggaaatcggacatttgtgcagcaaatgtagtttcgggtgggattcgctctt |
199 |
Q |
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| T |
37385091 |
taattattttttgagttgtataatcttccttggttttattactcataatggaaattggacatttgtgcagcaaatgttgtttcgggtgggattcgttctt |
37385190 |
T |
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| Q |
200 |
ggattgcaacggggagaaacg |
220 |
Q |
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| T |
37385191 |
ggattgcaacggggagaaacg |
37385211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 41227885 - 41227814
Alignment:
| Q |
1 |
ctccaatgggaccatggtaaatagttactcaggactgtgtgtaacagtaaagtatatagaaggtgaatttta |
72 |
Q |
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||||||||| ||| |||||||||||||||| || || |||| |||||| |||||||| ||||||||||||| |
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| T |
41227885 |
ctccaatggaaccctggtaaatagttactctggtctttgtgcaacagtgaagtatatccaaggtgaatttta |
41227814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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