View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_10 (Length: 631)
Name: NF2729_low_10
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 1542123 - 1541825
Alignment:
| Q |
1 |
attatttctagtttattcatctcattatttctttatatttcacgtgcacatacaaccagtttggtaaacatgatactgaagagatgcgattttttccaat |
100 |
Q |
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| T |
1542123 |
attatttctagtttattcatctcattatttctttatatttcacgtgcacatacaaccagtttggtaaacatgatactgaagagatgcgattttttccaat |
1542024 |
T |
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| Q |
101 |
gaacttaccacctattttgggattattactgtatataatggaatggaatgttatggcaatccactgtttgaaaattaaaaagtaaataatagaatggaat |
200 |
Q |
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| T |
1542023 |
gaacttcccacctattttgggattattactgtatataatggaatggaatgttatggcaatccactgtttgaaaattaaaaagtaaataatagaatggaat |
1541924 |
T |
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| Q |
201 |
ggaaagtgatgacattcattccaccacaaccattgtttattctcatttctataacgaataacattaatgaatgaaaaagttccaaatgggggcatcaaa |
299 |
Q |
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| T |
1541923 |
ggaaagtgatgacattcattccaccacaaccattgtttattctcatttctataacgaataacattaatgaatgaaaaagttccaaatgggggcatcaaa |
1541825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 321 - 602
Target Start/End: Complemental strand, 1541758 - 1541498
Alignment:
| Q |
321 |
ttggattcagaacctagaagtcatggtcatttgatgtttgctacgtataactgaagtaaaacatatacatattgatttcttttttcactcctaacatgta |
420 |
Q |
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| T |
1541758 |
ttggattcagaacctagaagtcatggtcatttgaggtttgctacgtataactgaagtaaaacatatacatagtgatttcttttttcaatcctaacatgta |
1541659 |
T |
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| Q |
421 |
tccgaattaaaagacaattttttccatgcagaagtatgattctgaacacatatgtatagtttctttggaagcaatggccggaataaagaaggtccttata |
520 |
Q |
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| T |
1541658 |
tccaaattaaaagacaattttttacgtgcagaagtatgattctgaacac--atgtatagtttc-------------------ataaagaaggtctttgta |
1541580 |
T |
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| Q |
521 |
gataccatccattaaagggtttaaaaacatgaagttagctatatgatttgaacaaaattcataaaacaaaagaggggagcta |
602 |
Q |
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| T |
1541579 |
gataccattcattaaagggtttaaaaacatgaagttagctatatgatttgaacaaaattcataaaacaaaagaggggagcta |
1541498 |
T |
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