View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_100 (Length: 237)
Name: NF2729_low_100
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_100 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45363519 - 45363740
Alignment:
| Q |
1 |
gcacttccacaaggaattgtcccatttgtcttcgccaaggaatacaatgtacatcctgatattctcagtacagggtatgtataaataaaannnnnnnctt |
100 |
Q |
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| T |
45363519 |
gcacttccacaaggaattgtcccatttgtcttcgccaaggaatacaatgtacatcctgatattctcagtacagggtatgtataaataaaaaaattt-ctt |
45363617 |
T |
|
| Q |
101 |
ccatcaattcaattctaatcaatgtagagctcgatggattaaatgcagggtaatttttgggatgttgattgcattgcccataacgctcgtttattacatc |
200 |
Q |
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| T |
45363618 |
ccatcaattcaattctaatcaatgtagagctcgatggattaaatgcagggtaatttttgggatgttgattgcattgcccataacgctcgtttattacatc |
45363717 |
T |
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| Q |
201 |
ttgttgggtctatgaatggaatg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
45363718 |
ttgttgggtctatgaatggaatg |
45363740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 25043212 - 25043284
Alignment:
| Q |
4 |
cttccacaaggaattgtcccatttgtcttcgccaaggaatacaatgtacatcctgatattctcagtacagggt |
76 |
Q |
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| T |
25043212 |
cttccacaaggaattgtcccatttgtctttgctaaagaatataatgtacatcctgatattctaagcacagggt |
25043284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 34972904 - 34972965
Alignment:
| Q |
4 |
cttccacaaggaattgtcccatttgtcttcgccaaggaatacaatgtacatcctgatattct |
65 |
Q |
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| T |
34972904 |
cttccccaaggaatagtcccttttgtgtttgccaaggaatacaatgttcatcctgacattct |
34972965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 33104998 - 33105074
Alignment:
| Q |
1 |
gcacttccacaaggaattgtcccatttgtcttcgccaaggaatacaatgtacatcctgatattctcagtacagggta |
77 |
Q |
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|||||||| ||||| ||||| |||||||| || |||||||| |||||||| ||||| | ||||| ||||||||||| |
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| T |
33104998 |
gcacttcctcaagggattgttccatttgtgtttgccaaggagtacaatgttcatccagccattcttagtacagggta |
33105074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 52718520 - 52718560
Alignment:
| Q |
144 |
tgcagggtaatttttgggatgttgattgcattgcccataac |
184 |
Q |
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| T |
52718520 |
tgcagggttatatttggaatgttgattgcattgcccataac |
52718560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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