View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_102 (Length: 236)
Name: NF2729_low_102
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_102 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 92627 - 92410
Alignment:
| Q |
4 |
gaacatataatatatatctcaatatttcatccaaaacctaatcaaaatttatctaataattctacaatcatacgcacgtcacatt--gcacaa---acca |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| |
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| T |
92627 |
gaacatataatatatatctcaatatttcatccaaaacctaatcaaaatttatctaataattctacaatcatacacacgtcacatttagcacaaacgacca |
92528 |
T |
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| Q |
99 |
agatatttcagccaacaaaatttgcaaacaatttattaaacacatcaagaacatcaaagnnnnnnnntctctccccttacctcaaagatcaaagtgcacg |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
92527 |
agatatttcagccaacaaaatttgcaaacaatttattaaacacatcaagaacatcaaag-aaaaaaatctctccccttacctcaaagatcaaagtgcacg |
92429 |
T |
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| Q |
199 |
atcaaatgcttgaaatcga |
217 |
Q |
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||||||||||||||||||| |
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| T |
92428 |
atcaaatgcttgaaatcga |
92410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 4 - 217
Target Start/End: Original strand, 40873655 - 40873872
Alignment:
| Q |
4 |
gaacatataatatatatctcaatatttcatccaaaacctaatcaaaatttatctaataattctacaatcatacgcacgtcacatt--gcacaa---acca |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| |
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| T |
40873655 |
gaacatataatatatatctcaatatttcatccaaaacctaatcaaaatttatctaataattctacaatcatacacacgtcacatttagcacaaacgacca |
40873754 |
T |
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| Q |
99 |
agatatttcagccaacaaaatttgcaaacaatttattaaacacatcaagaacatcaaagnnnnnnnntctctccccttacctcaaagatcaaagtgcacg |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40873755 |
agatatttcagccaacaaaatttgcaaacaatttattaaacacatcaagaacatcaaag-aaaaaaatctctccccttacctcaaagatcaaagtgcacg |
40873853 |
T |
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| Q |
199 |
atcaaatgcttgaaatcga |
217 |
Q |
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||||||||||||||||||| |
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| T |
40873854 |
atcaaatgcttgaaatcga |
40873872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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