View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_105 (Length: 227)
Name: NF2729_low_105
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_105 |
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Alignment Details
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 31853379 - 31853451
Alignment:
| Q |
73 |
tcaaaataattactacttgagcaagggttcaaatcaaagaaagaaaaagttgcaccatttaaaacacacttaa |
145 |
Q |
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| T |
31853379 |
tcaaaataattactacttgagcaagggttcaaatcaaagaaagaaaaagttgcaccatttaaaacacaattaa |
31853451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 31851917 - 31851956
Alignment:
| Q |
19 |
cttacaggatcattttattcagtttgtttagtctttcggt |
58 |
Q |
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| T |
31851917 |
cttacaggatcatcttgttcagtttgtttagtctttcggt |
31851956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 31851362 - 31851404
Alignment:
| Q |
104 |
aatcaaagaaa-gaaaaagttgcaccatttaaaacacacttaa |
145 |
Q |
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| T |
31851362 |
aatcaaagaaaagaaaaagttgcaccatataaaacacacttaa |
31851404 |
T |
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