View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_11 (Length: 597)
Name: NF2729_low_11
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_11 |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 26 - 488
Target Start/End: Original strand, 83339 - 83801
Alignment:
| Q |
26 |
gatacgtgcttcatttgatggttattattttgtcatgatttttgtgtgtgtataacttcacatattcttaagccattaaaacatatgcatatgtggtttt |
125 |
Q |
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| T |
83339 |
gatacgtgcttcatttgatggttattattttgtcatgatttttgtgtgtgtataacttcacatattcttaagccattaaaacatatgcatgtgtggtttt |
83438 |
T |
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| Q |
126 |
gtgatatacagggttatgtgaacaaggttgaaatatttttctgcacactacagtcatttatgtggtctcttttacactttcatagtgatttttctaattt |
225 |
Q |
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| T |
83439 |
gtgatatacaggcttatgtgaacaaggttgaaatatttttctgcatactacagtcatttatgtggtctcttttacactttcatagtgatttttctaattt |
83538 |
T |
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| Q |
226 |
taaaatttggttcttgtgcatatatgtaattgccatgagtgaacttaccttgtgatgcttatatatgtatgtttttgtgatttgagaaaattataaaagc |
325 |
Q |
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| T |
83539 |
taaaatttggttcttgtgcatatatgtaattgccatgagtgaacttaccttgtgatgcttatatatgtatgtttttgtgatttgagaaaattataaaagc |
83638 |
T |
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| Q |
326 |
tgtacataatttatataaggaaatgtaatattgagaaacttttcaataagtttgaatagtttaaagttaaactgttcagcattccatacaattatatgat |
425 |
Q |
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| T |
83639 |
aatacataatttatatgaggaaatgtaatattgagaaacttttcaataagtttgaatagtttaaagttaaactgttcaggattccatacaattatatgat |
83738 |
T |
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| Q |
426 |
gatacttgattgaagaaaattgataggaataatttgttggccaaagttgaacccatgactaat |
488 |
Q |
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| T |
83739 |
gatacttgattgaagaaaattgacaggcataatttgttcgccaaagttgaacccatgactaat |
83801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 501 - 585
Target Start/End: Original strand, 83858 - 83942
Alignment:
| Q |
501 |
ttatcataaattatttaaagtttgtttgatagtgtggtcatgagaatgaatttattataagtatcttagttctttgcctttgcta |
585 |
Q |
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| T |
83858 |
ttatcataaattatttaaagtttgtttgatagtgtggtcatgagaatgaatttattataagtattttagttctttacctttgcta |
83942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 34234041 - 34234079
Alignment:
| Q |
29 |
acgtgcttcatttgatggttattattttgtcatgatttt |
67 |
Q |
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| T |
34234041 |
acgtgcttcatttgatggttattattttgtcatgatttt |
34234079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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