View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2729_low_113 (Length: 210)
Name: NF2729_low_113
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_113 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0041 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 92817 - 92608
Alignment:
| Q |
1 |
gtgtgaaaatcataactaaatcatacactcacgtggacaaacattaacttagcttcagtgcacacaaaaacctgcatctacattcttaaacgaatccttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
92817 |
gtgtgaaaatcataactaaatcatacactcacgtggacaaacattaacttagcttcagtgcacacaaaaacctgcatctacattcttaaacgaatccttt |
92718 |
T |
|
| Q |
101 |
tccagtaccttggtcacgcacctcctaaactattaactgttaactattaagccaaaattttaggatttaaacaactaaaagtccaacacagaacatataa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
92717 |
tccagtaccttggtcacgcacctcctaaactattaactgttaactattaagccaaaattttaggatttaaacaactaaaagtccaacaccgaacatataa |
92618 |
T |
|
| Q |
201 |
tatatatctc |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
92617 |
tatatatctc |
92608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 40873465 - 40873674
Alignment:
| Q |
1 |
gtgtgaaaatcataactaaatcatacactcacgtggacaaacattaacttagcttcagtgcacacaaaaacctgcatctacattcttaaacgaatccttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40873465 |
gtgtgaaaatcataactaaatcatacactcacgtggacaaacattaacttagcttcagtgcacacaaaaacctgcatctacattcttaaacgaatccttt |
40873564 |
T |
|
| Q |
101 |
tccagtaccttggtcacgcacctcctaaactattaactgttaactattaagccaaaattttaggatttaaacaactaaaagtccaacacagaacatataa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40873565 |
tccagtaccttggtcacgcacctcctaaactattaactgttaactattaagccaaaattttaggatttaaacaactaaaagtccaacaccgaacatataa |
40873664 |
T |
|
| Q |
201 |
tatatatctc |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
40873665 |
tatatatctc |
40873674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University