View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_115 (Length: 206)
Name: NF2729_low_115
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_115 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 46642098 - 46642303
Alignment:
| Q |
1 |
ctaaagaagcagtgaaacttcctttgtgctgctgctgatgactaactgaatgccaaacattttggttggcatcttgaaagctagaagaatgagagaatcc |
100 |
Q |
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| T |
46642098 |
ctaaagaagcagtgaaacttcctctgtgctgctgctgatgactaactgaatgccaaacattttggttggcatcttgaaagctagaagaatgagagaatcc |
46642197 |
T |
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| Q |
101 |
cagtttatccgatcccaaacctactgaagaattctcagtgatgtggcttttttctgccttgacacaagcagttaatctcctccttttaataggaacagct |
200 |
Q |
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| T |
46642198 |
cagtttatccgatcccaaacctactgaagaattctcagtgatgtggcttttttctgccttgacacaagcagttaatctcctccttttaataggaacagct |
46642297 |
T |
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| Q |
201 |
gcatga |
206 |
Q |
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|||||| |
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| T |
46642298 |
gcatga |
46642303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 206
Target Start/End: Original strand, 46651261 - 46651435
Alignment:
| Q |
32 |
ctgctgatgactaactgaatgccaaacattttggttggcatcttgaaagctagaagaatgagagaatcccagtttatccgatcccaaacctactgaagaa |
131 |
Q |
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||||||||| |||| || || |||||||||| ||||||| | ||||||||||||| |||||||||| ||||| || |||||||||||| |||||||| |
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| T |
46651261 |
ctgctgatggctaattggatcacaaacatttttgttggcaacgagaaagctagaagactgagagaatcttagtttgtctgatcccaaacctcctgaagaa |
46651360 |
T |
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| Q |
132 |
ttctcagtgatgtggcttttttctgccttgacacaagcagttaatctcctccttttaataggaacagctgcatga |
206 |
Q |
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| T |
46651361 |
ttctcagttatgcagcttttctctgccttggcacaagcagtcaatcttctccttttaataggaacaactgcatga |
46651435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 32 - 206
Target Start/End: Original strand, 46173307 - 46173481
Alignment:
| Q |
32 |
ctgctgatgactaactgaatgccaaacattttggttggcatcttgaaagctagaagaatgagagaatcccagtttatccgatcccaaacctactgaagaa |
131 |
Q |
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|||||||| ||||| || || ||||||||| |||||||| || ||||||||||||| |||| | || |||||||| ||||||| |||| |||||||| |
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| T |
46173307 |
ctgctgattactaattggatcacaaacatttgggttggcaactcgaaagctagaagatcgagaaattcgtagtttatctgatcccagacctcctgaagaa |
46173406 |
T |
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| Q |
132 |
ttctcagtgatgtggcttttttctgccttgacacaagcagttaatctcctccttttaataggaacagctgcatga |
206 |
Q |
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| T |
46173407 |
ttctcaatgatgcagcttttctcttccttggcacaatcagtcaatctcctccttttaataggaacaactgcatga |
46173481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 46638579 - 46638497
Alignment:
| Q |
124 |
ctgaagaattctcagtgatgtggcttttttctgccttgacacaagcagttaatctcctccttttaataggaacagctgcatga |
206 |
Q |
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| T |
46638579 |
ctgaagaattctcaacaatgcggcttttctctgatttgacacaagcagtcaatttcctccgtttaataggaacggctgcatga |
46638497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 46638656 - 46638591
Alignment:
| Q |
32 |
ctgctgatgactaactgaatgccaaacattttggttggcatcttgaaagctagaagaatgagagaa |
97 |
Q |
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| T |
46638656 |
ctgctgatgactaactggaccgcaaacattttggtttgcatctagaaagctagaagaccgagagaa |
46638591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 206
Target Start/End: Complemental strand, 46619861 - 46619779
Alignment:
| Q |
124 |
ctgaagaattctcagtgatgtggcttttttctgccttgacacaagcagttaatctcctccttttaataggaacagctgcatga |
206 |
Q |
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| T |
46619861 |
ctgaagaattctcaacaatgcgacttttctctgatttggcacaagcagtcaatttcctccgtttaataggaacggctgcatga |
46619779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 64 - 197
Target Start/End: Original strand, 15768522 - 15768655
Alignment:
| Q |
64 |
ggttggcatcttgaaagctagaagaatgagagaatcccagtttatccgatcccaaacctactgaagaattctcagtgatgtggcttttttctgccttgac |
163 |
Q |
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| T |
15768522 |
ggttggcaactcggaacctagaagacggagaaaatccaagattatctgatcccaaacctcctgaagaattctcaacaatgcggcttttctcttccttggc |
15768621 |
T |
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| Q |
164 |
acaagcagttaatctcctccttttaataggaaca |
197 |
Q |
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| T |
15768622 |
acaagcagtcaatcttctccttttaataggaaca |
15768655 |
T |
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