View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2729_low_116 (Length: 205)
Name: NF2729_low_116
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_116 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 24806164 - 24805997
Alignment:
| Q |
21 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatatgttgtcatgcaataagttgccaaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24806164 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatacgttgtcatgcaataagttgccaaa |
24806065 |
T |
|
| Q |
121 |
ttatcagccctcgtattaaaaatattaaaaaaccaaaataacatagaacaagtgcgatatattcaatg |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24806064 |
ttatcagccctcgtattaaaaatattaaaaaaccaaaataacatagaacaagtgcgatatattcaatg |
24805997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 26281523 - 26281584
Alignment:
| Q |
25 |
tcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagaga |
87 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
26281523 |
tcatcttcctcttctccatcaataaaccttaaaat-agaccaaaagcaattaacagttagaga |
26281584 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 7e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 1709465 - 1709298
Alignment:
| Q |
21 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatatgttgtcatgcaataagttgccaaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1709465 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatacgttgtcatgcaataagttgccaaa |
1709366 |
T |
|
| Q |
121 |
ttatcagccctcgtattaaaaatattaaaaaaccaaaataacatagaacaagtgcgatatattcaatg |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1709365 |
ttatcagccctcgtattaaaaatattaaaaaaccaaaataacatagaacaagtgcgatatattcaatg |
1709298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 17791982 - 17792146
Alignment:
| Q |
24 |
atcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatatgttgtcatgcaataagttgccaaatta |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17791982 |
atcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaataattaacagttagagagatggatacgttgtcatgcaataagttgccaaatta |
17792081 |
T |
|
| Q |
124 |
tcagccctcgtattaaaaatattaaaaaaccaaaataacatagaacaagtgcgatatattcaatg |
188 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17792082 |
tcatccctcgtattaaaaatattaaaaaaccaaaataacatagaacaagtgcgatatattcaatg |
17792146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 19476689 - 19476856
Alignment:
| Q |
21 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatatgttgtcatgcaataagttgccaaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
19476689 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggataagttgtcatgcaataagttgccaaa |
19476788 |
T |
|
| Q |
121 |
ttatcagccctcgtattaaaaatattaaaaaaccaaaataacatagaacaagtgcgatatattcaatg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
19476789 |
ttatcagccctcgtattaaaaatattaaaaaaccaaaataacatataacaagtgcgatatattcaatg |
19476856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 19547614 - 19547781
Alignment:
| Q |
21 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatatgttgtcatgcaataagttgccaaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
19547614 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggataagttgtcatgcaataagttgccaaa |
19547713 |
T |
|
| Q |
121 |
ttatcagccctcgtattaaaaatattaaaaaaccaaaataacatagaacaagtgcgatatattcaatg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19547714 |
ttatcagccctcgtattaaaaatattaaaaaaccaaaataacatataacaagtgcgatatattcaatg |
19547781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 21 - 188
Target Start/End: Complemental strand, 19585076 - 19584908
Alignment:
| Q |
21 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatatgttgtcatgcaataagttgccaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19585076 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaataattaacagttagagagatggatatgttgtcatgcaataagttgccaaa |
19584977 |
T |
|
| Q |
121 |
ttatcagccctcgtattaaaaatattaaaaaacc-aaaataacatagaacaagtgcgatatattcaatg |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
19584976 |
ttatcagccctcgtattaaaaatattaaaaaaccaaaaataacatataacaagtgcgatatattcaatg |
19584908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 28326421 - 28326487
Alignment:
| Q |
25 |
tcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatgg |
92 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| ||||||||| |||||| ||||||||| |||| |
|
|
| T |
28326421 |
tcatcttcctcttctccatcaatgaacctttgaat-agaccaaaagtaattaatagttagagaaatgg |
28326487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 1774072 - 1774239
Alignment:
| Q |
21 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatatgttgtcatgcaataagttgccaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1774072 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaataattaacagttagagagatggatacgttgtcatgcaataagttgccaaa |
1774171 |
T |
|
| Q |
121 |
ttatcagccctcgtattaaaaatattaaaaaaccaaaataacatagaacaagtgcgatatattcaatg |
188 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1774172 |
ttatcatccctcgtattaaaaatattaaaaaaccaaaataacatagaacaagtgcgatatattcaatg |
1774239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 5e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 12413178 - 12413296
Alignment:
| Q |
24 |
atcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatatgttgtcatgcaataagttgccaaatta |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12413178 |
atcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatatgttgtcatgcaataagttgccaaatta |
12413277 |
T |
|
| Q |
124 |
tcagccctcgtattaaaaa |
142 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
12413278 |
tcagccctcgtattaaaaa |
12413296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 18150899 - 18151000
Alignment:
| Q |
21 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatatgttgtcatgcaataagttgccaaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18150899 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatacgttgtcatgcaataagttgccaaa |
18150998 |
T |
|
| Q |
121 |
tt |
122 |
Q |
| |
|
|| |
|
|
| T |
18150999 |
tt |
18151000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 15275287 - 15275388
Alignment:
| Q |
21 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatatgttgtcatgcaataagttgccaaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15275287 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatacgttgtcatgcaataagttgccaaa |
15275386 |
T |
|
| Q |
121 |
tt |
122 |
Q |
| |
|
|| |
|
|
| T |
15275387 |
tt |
15275388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 11893070 - 11893141
Alignment:
| Q |
24 |
atcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggata |
95 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
11893070 |
atcatcttcctcttctccatcaatgcatcttaaaataagacaaaaaacaattaacagttaaagagatggata |
11893141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 24222443 - 24222544
Alignment:
| Q |
21 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatatgttgtcatgcaataagttgccaaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24222443 |
cagatcatcttcctcttctccatcaatgcaccttaaaataagaccaaaaacaattaacagttagagagatggatacgttgtcatgcaataagttgccaaa |
24222542 |
T |
|
| Q |
121 |
tt |
122 |
Q |
| |
|
|| |
|
|
| T |
24222543 |
tt |
24222544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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