View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_12 (Length: 593)
Name: NF2729_low_12
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 14 - 580
Target Start/End: Original strand, 13421372 - 13421928
Alignment:
| Q |
14 |
aacaatatattaaaaatcgtggttgatctaaacatgcatgtaatatgagtaaattaaaattaatttataagatacatactaattgagtaacacaatatac |
113 |
Q |
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| T |
13421372 |
aacaatatattaaaaatcgtggttgatctaaacatg-----------agtaaattaaaattaatttataagatacatactaattgagtaacacaatatac |
13421460 |
T |
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| Q |
114 |
ttggagtagagagactttgtaagcaacaccatccattaattgagtaataatatgtctgaaatatacctaaaagnnnnnnnn---gccaaacctaaactat |
210 |
Q |
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| T |
13421461 |
ttggagtagagagactttgtaagcaacaccatgcattaattgagtaataatatgtctgaaatatacctaaaagtttttttttttgccaaacctaaactat |
13421560 |
T |
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| Q |
211 |
tgacaatattaaattcattacacctaacttcattacaaatcatacacgtggtgtatgaaaaacttcacttttatagtggaggagtcacttgatttgtttt |
310 |
Q |
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| T |
13421561 |
tgacaatattaaattcattacacctaacttcattacaaatcatacacgtggtgtatgaaaaacttcacttttatagtggaggagtcacttgatttgtttt |
13421660 |
T |
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| Q |
311 |
tatgagtttagggatgaggcttaagagggtcacttgttttgattacctgccattttgggtaaggcaattggacccaaaattgtatatatagtacatttat |
410 |
Q |
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| T |
13421661 |
tatgagtttagggatgaggcttaagagggtcacttgttttgattacctgccattttgggtaaggcaattggacccaaaattgtgtatatagtacatttat |
13421760 |
T |
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| Q |
411 |
atgtgtcacattccttttctttcttttaatcattgaatatcgatcacatgatcttcattaacatgccaaagttgataactttaacatataggaccaatga |
510 |
Q |
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| T |
13421761 |
atgtgtcacattccttttctttcttttaatcattgaatatcgatcacatgatcttcattaacatgccaaagttgataactttaacatataggaccaatga |
13421860 |
T |
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| Q |
511 |
aatttaataaattgaagtgttaaagatttgtgattgtgagttgtaagagtgtaaggataaacatgaaaat |
580 |
Q |
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| T |
13421861 |
aatttaataaattgaagtgttaaagatttgtgat--tgagttgtaagagtgtaaggataaacatgaaaat |
13421928 |
T |
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