View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_14 (Length: 567)
Name: NF2729_low_14
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 6 - 551
Target Start/End: Original strand, 2259145 - 2259695
Alignment:
| Q |
6 |
agtgagatgaaacaaccttttagatgattaaagtgaaatcaaacaaccttttagatgatttttacctcaaaatcataagaaaccaagtcacatgtgaatg |
105 |
Q |
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||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2259145 |
agtgaaatcaaacaacctcttagatgattaaagtgaaatcaaacaaccttttagatgatttttacctcaaaatcacaagaaaccaagtcacatgtgaatg |
2259244 |
T |
|
| Q |
106 |
gaaggtggaatcatacgtggcatcccaaaatggttaaaggtagtatgtatgaatctattaattaaaatagaaaatgaaggaatagtccaaccaacgcttt |
205 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2259245 |
gaaggtggaatcatacatggcagcccaaaatggttaaaggtggtatgtatgaatctattaattaaaatagaaaatgaaggaatggtccaaccaacgcttt |
2259344 |
T |
|
| Q |
206 |
aaatactagtgtgatattcccgcgacaacacnnnnnnngtacttctactgttagtgacaaataaactttgaaatgaaagtgatagtaagttcatacacac |
305 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2259345 |
aaatactagtgtgatattcccgcgacaacac-aaaaaagtacttctactgttagtgacaaataaactttgaaatgaaagtgatagtaagttcatacacac |
2259443 |
T |
|
| Q |
306 |
tgtagctccttcttggcccctacattgtaattgtaaccc------attaattccatcaccataacaacacttcattccacttctagtacaatattagtgt |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2259444 |
tgtagctccttcttggcccctacattgtaattgtaacccattattattaattccatcaccataacaacacttcattccacttctagtacaatattagtgt |
2259543 |
T |
|
| Q |
400 |
tgcttattcaatctctttatatatctatctatcactttgattccaaattaatatcaaatttagttaacattatatttatacaatatcacattcatttcac |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2259544 |
tgcttattcaatctctttatatatctatctatcactttgattccaaattaatatcaaacttagttaacattatatttatacaatatcacattcatttcac |
2259643 |
T |
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| Q |
500 |
ttactcggccaaaacgggtctccctgtttggttgcttggattgggtccggac |
551 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2259644 |
ttactcagccaaaacgggtctccctctttggttgcttggattgggtccggac |
2259695 |
T |
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