View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_16 (Length: 553)
Name: NF2729_low_16
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 10 - 538
Target Start/End: Original strand, 54473611 - 54474137
Alignment:
| Q |
10 |
gatgaattgggccacaaggcttaaaattgcggttggatccgccaaaggacttgcttatttacatgaggactgtaagttactatgtgcttgtaatctaatt |
109 |
Q |
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| T |
54473611 |
gatggattgggccacaaggcttaaaattgcggttggatccgccaaaggacttgcttatttacacgaggactgtaagttactatgtgcttgtaatctaatt |
54473710 |
T |
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| Q |
110 |
ttgacaaatgactaaaatacatttttatggatgaatccgtagagagaactcaaattcgaatatggcgagaatattcattgaccagaatttaccctcttcc |
209 |
Q |
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| T |
54473711 |
ttgacaaatgactaaaatacatttttatggatgaatccgtagagagaactcaaattcgaatatggcgagaatattcattgaccagaatttaccctcttcc |
54473810 |
T |
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| Q |
210 |
ccccaaaaactagagg-ttaagcccgaaaaactaacattatcattaataacttgttcaaacaataacctgcaggtcaccctagaatcattcaccgagaca |
308 |
Q |
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| T |
54473811 |
ccccaaaaactagagggttaagcccgaaaaactaacattatcattaataacttgttcaaacaataacctgcaggtcaccctagaatcattcaccgagaca |
54473910 |
T |
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| Q |
309 |
tcaagggtgcaaacattctaattgaaaacaactttgaagccaaagtacgtataatgatcatttactatatgtttagttattaaagaattgtaattatcaa |
408 |
Q |
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| T |
54473911 |
tcaagggtgcaaacattctaattgaaaacaactttgaagccaaagtacgtataatgatcatttactatatgtttagttattaaagaattgtaattatcaa |
54474010 |
T |
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| Q |
409 |
gtgattctatccatttaggtggcagattttggattggcaaaatttactcaagacactaacactcatgtttctactcgtgtgatgggaacatttgggtaat |
508 |
Q |
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| T |
54474011 |
gtgattctatccatttaggtggcagattttggattggcaaaatttactcaagacactaacactcatgtttctactcgtgtgatgggaacatttgggtaat |
54474110 |
T |
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| Q |
509 |
taaccaataataattcaacccaaactatat |
538 |
Q |
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| T |
54474111 |
ta---aataataattcaacccaaactatat |
54474137 |
T |
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Back To:
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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 509
Target Start/End: Complemental strand, 33145136 - 33145051
Alignment:
| Q |
424 |
taggtggcagattttggattggcaaaatttactcaagacactaacactcatgtttctactcgtgtgatgggaacatttgggtaatt |
509 |
Q |
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| T |
33145136 |
taggtggctgattttggattggctaagttgactaccgatactaatacacatgtctcaactcgtgtcatgggaacattcgggtaatt |
33145051 |
T |
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