View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_2 (Length: 910)
Name: NF2729_low_2
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 355 - 881
Target Start/End: Original strand, 8155307 - 8155834
Alignment:
| Q |
355 |
tgacactagatgctaatatcatcttatttttagtatggatttgatagaattatttctagaaaggttagatcatgggttatgtctaggactaggactgcat |
454 |
Q |
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| T |
8155307 |
tgacactagatgctaatatcatcttatttttagtatggatttgatagaattatttctagaaaggttagatcatgggttatgtctaggactaggactgcat |
8155406 |
T |
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| Q |
455 |
tcttggctgcaaacatcaagattttttatatttgtgtttacacaacctcaattgggatttggatttactgcagtcgtaaaatgatgaagtcgcgcaatca |
554 |
Q |
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| T |
8155407 |
tcttggctgcaaacatcaagattttttatatttgtgtttacacaacctcaattgggatttggatttactgcagtcgtaaaatgatggagtcgcgcaatca |
8155506 |
T |
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| Q |
555 |
atgcattgtagatatttcaattgaaataagacagaccagaatat--ttaacacgtacaaataaattaaaaatagtatcgatcaaattcggatggccagga |
652 |
Q |
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| T |
8155507 |
atgcattgtagatatttcaattgaaataagatggaccagaatatatttaacacgtacaaataaattaaaaatagtatcgatcaaattcggatggccagga |
8155606 |
T |
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| Q |
653 |
gattcacgtgcagtgattatatttgactacaagaaatccatttccagtaaattgaaattgctttagtcacattttattgcagtatcatggatcatttcat |
752 |
Q |
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| T |
8155607 |
gattcacgtgcagtgattatatttgactacaagaaatccatttccagtaaattgaaattgctttagtcacattttattgcagtatcatggatcatttcat |
8155706 |
T |
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| Q |
753 |
gaggcatgtgtgatagttaccgcggctaatttgaaactataatcatcaagtgattcaaatgtgtcgaattttgtagaaaattatactcagacttatgaat |
852 |
Q |
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| T |
8155707 |
gaggcatgtgtgatagttaccgcggctaatttgaaactataatcatcaagtgattcaaatgtgtcgaattttgtagaaaattatactc-gacttatgaat |
8155805 |
T |
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| Q |
853 |
cgcgatgatgatataaataattattcgtt |
881 |
Q |
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| T |
8155806 |
cgcgatgatggtataaataattactcgtt |
8155834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 4 - 320
Target Start/End: Original strand, 8154954 - 8155270
Alignment:
| Q |
4 |
atgtcgaagaatatggccggaaaataaaatctgactatataactagtttggattacatggaaatggattatactttatttttgagtctttgcattcgaat |
103 |
Q |
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| T |
8154954 |
atgtcgaaaattatggccgaaaaataaaatctaactatttaactagttttgattacatggaaatggattatactttatttttgagtctttgcattcgaat |
8155053 |
T |
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| Q |
104 |
gtcctcaagtataagacgtgtctctctgcgtgcctcattactacattgtctataacatagtactannnnnnnggtagagatctctaattctttcatctca |
203 |
Q |
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| T |
8155054 |
gtcctcaagtataagacgtgtctctctgcgtgcctcattactacattgtctataacattgtaccatttttttggtagagatctctaattctttcatctca |
8155153 |
T |
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| Q |
204 |
tccaaaactatttgtctgttcctgcactctatgctgcagaaaccttgatctcccctgcataataattaccaacataatgtttcatcagatcaaggttaaa |
303 |
Q |
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| T |
8155154 |
tctaaaactatttgtctgttcctgcactctatactgcagaaaccttgatctcccctgcataataattaccaacataatgtttcatcagatcaaggttaaa |
8155253 |
T |
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| Q |
304 |
tgtatgagatgttaatt |
320 |
Q |
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| T |
8155254 |
tgtatgagatgttaatt |
8155270 |
T |
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