View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2729_low_20 (Length: 523)

Name: NF2729_low_20
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2729_low_20
NF2729_low_20
[»] chr4 (6 HSPs)
chr4 (1-505)||(35179292-35179786)
chr4 (1-122)||(22542437-22542557)
chr4 (1-134)||(39471201-39471333)
chr4 (4-134)||(43771170-43771299)
chr4 (70-134)||(2187885-2187949)
chr4 (70-121)||(13069997-13070049)
[»] chr3 (5 HSPs)
chr3 (52-134)||(37776759-37776839)
chr3 (4-134)||(41451902-41452031)
chr3 (4-134)||(24734749-24734878)
chr3 (70-118)||(29755560-29755609)
chr3 (71-139)||(48351475-48351544)
[»] chr7 (9 HSPs)
chr7 (4-123)||(25686842-25686960)
chr7 (70-134)||(19840956-19841021)
chr7 (4-122)||(6442221-6442338)
chr7 (70-131)||(22786198-22786260)
chr7 (70-134)||(26703511-26703576)
chr7 (82-123)||(41508359-41508400)
chr7 (71-134)||(11692223-11692287)
chr7 (106-134)||(12271030-12271058)
chr7 (70-133)||(17354598-17354662)
[»] chr2 (1 HSPs)
chr2 (4-134)||(6980127-6980256)
[»] chr1 (3 HSPs)
chr1 (4-134)||(32211791-32211920)
chr1 (80-134)||(50539168-50539222)
chr1 (70-134)||(28218119-28218184)
[»] chr6 (2 HSPs)
chr6 (4-134)||(34905380-34905509)
chr6 (70-118)||(12785010-12785059)
[»] chr5 (2 HSPs)
chr5 (70-134)||(5413808-5413873)
chr5 (70-134)||(42224662-42224727)
[»] scaffold0018 (1 HSPs)
scaffold0018 (4-132)||(27858-27985)


Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 35179786 - 35179292
Alignment:
Q  1 taacaacactctcttttgaacactatttttaatactcatcctattatta-tataaatcattgtaggtctactacactttgaaattgaacccacataaagt 99  Q
    ||||||||||||||||||| |||||| ||||||| |||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35179786 taacaacactctcttttga-cactatctttaatattcactctattattagtataaatcattgtaggtctactacactttgaaattgaacccacgtaaagt 35179688  T
Q  100 agtaaaacatacattgatttcatctgataaaagagagtgttaaaaagtgattgatgtcagtattcctctatccatgaatatatgtaattacctatagttt 199  Q
    ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35179687 agtgaaacatacattgatttcatccgataaaagagagtgttaaaaagtgattgatgtcagtattcctctatccatgaatatatgtaattacctatagttt 35179588  T
Q  200 cttcatannnnnnnaaagacacaacaaattaacacataataatattgatacatttcattcattcgagctaacaccaatttatcacactcatttatgtgga 299  Q
    |||||||       |||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| |||||||||||||||||||    
T  35179587 cttcatatttttttaaagacacaacaaattaacacataataatattgatacat----ttcattcgagctaacaccaatttttcacactcatttatgtgga 35179492  T
Q  300 tttccgttaaactatgttacccataacgaatttcatccgcatatatacaagtatttttgccctccttacatgggaggtagccgccatggtagaatataag 399  Q
    ||||  ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35179491 tttcgattaaactatgttacccataacgaatttcatccgc--atatacaagtatttttgccctccttacatgggaggtagccgccatggtagaatataag 35179394  T
Q  400 gaaataaatacttggacacatgattgagaggcactaaataaggcaacatttttcccatcaataggaggaatcagattcgacccacttactcatctatcat 499  Q
    |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35179393 g----aaatacttggacacatgattgagaggcactaaataaggcaacatttttcccatcaataggaggaatcagattcgacccacttactcatctatcat 35179298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 22542557 - 22542437
Alignment:
Q  1 taacaacactctcttttgaacactatttttaatactcatcctattatta-tataaatcattgtaggtctactacactttg-aaattgaacccacataaag 98  Q
    |||||||||| ||||||||||||| |||||||||||||  || |||||| | ||||||||||| ||   ||||  ||||| |||||||||||||| ||||    
T  22542557 taacaacactatcttttgaacactctttttaatactcactctcttattagtttaaatcattgtggg---actattctttgaaaattgaacccacacaaag 22542461  T
Q  99 tagtaaaacatacattgatttcat 122  Q
    | ||  ||||||| ||||||||||    
T  22542460 tggtggaacatactttgatttcat 22542437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 39471333 - 39471201
Alignment:
Q  1 taacaacactctcttttgaacactatttttaatactcatcctattatta-tataaatcattgtaggtctactacactttgaa-attgaacccacataaag 98  Q
    ||||||||||||||||| |||| | | | |||||||||  || |||||  | ||||||||||| |||||||   |||||||| |||||||| ||| ||||    
T  39471333 taacaacactctcttttaaacattctctctaatactcactctcttattggtttaaatcattgtgggtctac---actttgaagattgaaccaacacaaag 39471237  T
Q  99 tagtaaaacatacattgatttcatctgataaaagag 134  Q
    | ||   ||||||||||||||||||| |||||||||    
T  39471236 tggtgggacatacattgatttcatctaataaaagag 39471201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 43771299 - 43771170
Alignment:
Q  4 caacactctcttttgaacactatttttaatactcatcctattatta-tataaatcattgtaggtctactacactttgaaa-ttgaacccacataaagtag 101  Q
    |||| |||||||||||||||  | |||||||||||  || |||||  | ||||||||||| |||||||   ||||||||| ||||||||||| | ||| |    
T  43771299 caacgctctcttttgaacaccctctttaatactcactctcttattggtttaaatcattgtgggtctac---actttgaaaattgaacccacacagagtgg 43771203  T
Q  102 taaaacatacattgatttcatctgataaaagag 134  Q
    |   ||||||||||||||||||  |||||||||    
T  43771202 tgggacatacattgatttcatccaataaaagag 43771170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 2187885 - 2187949
Alignment:
Q  70 ctacactttgaaattgaacccacataaagtagtaaaacatacattgatttcatctgataaaagag 134  Q
    ||||||||||||| |||||||||||||||| ||   |||| ||||||||||| |  |||||||||    
T  2187885 ctacactttgaaaatgaacccacataaagtggtgggacattcattgatttcacccaataaaagag 2187949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 13070049 - 13069997
Alignment:
Q  70 ctacactttgaaattg-aacccacataaagtagtaaaacatacattgatttca 121  Q
    ||||||||||||| || |||||||||||||| ||  |||||||||||||||||    
T  13070049 ctacactttgaaaatggaacccacataaagtggtggaacatacattgatttca 13069997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 37776759 - 37776839
Alignment:
Q  52 taaatcattgtaggtctactacactttgaaa-ttgaacccacataaagtagtaaaacatacattgatttcatctgataaaagag 134  Q
    |||||||||||||||||||   ||||||||| ||||||||||| ||||| |||  ||||||||||||||||||| |||||||||    
T  37776759 taaatcattgtaggtctac---actttgaaaattgaacccacacaaagtggtaggacatacattgatttcatctaataaaagag 37776839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 41451902 - 41452031
Alignment:
Q  4 caacactctcttttgaacactatttttaatactcatcctattatt-atataaatcattgtaggtctactacactttg-aaattgaacccacataaagtag 101  Q
    ||||||||||||||||||||| | | |||||||||  || |||||  | ||||||||||| ||||||||   ||||| |||||||||||||| ||||| |    
T  41451902 caacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctact---ctttgaaaattgaacccacacaaagtgg 41451998  T
Q  102 taaaacatacattgatttcatctgataaaagag 134  Q
    |   |||||| |||||||||||  |||||||||    
T  41451999 tgggacatactttgatttcatccaataaaagag 41452031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 24734878 - 24734749
Alignment:
Q  4 caacactctcttttgaacactatttttaatactcatcctattatta-tataaatcattgtaggtctactacactttgaaa-ttgaacccacataaagtag 101  Q
    ||||||||||||||||||||| | | |||||||||  || |||||  | ||||||||||| || |||||   |||||||| ||||||||||| ||||| |    
T  24734878 caacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggcctact---ctttgaaaattgaacccacacaaagtgg 24734782  T
Q  102 taaaacatacattgatttcatctgataaaagag 134  Q
    |   |||||| |||||||||||  |||||||||    
T  24734781 tgggacatactttgatttcatccaataaaagag 24734749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 29755609 - 29755560
Alignment:
Q  70 ctacactttgaaa-ttgaacccacataaagtagtaaaacatacattgatt 118  Q
    ||||||||||||| ||||||||||| |||||||| ||||||| |||||||    
T  29755609 ctacactttgaaaattgaacccacacaaagtagtgaaacatatattgatt 29755560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 48351544 - 48351475
Alignment:
Q  71 tacactttgaaa-ttgaacccacataaagtagtaaaacatacattgatttcatctgataaaagagagtgt 139  Q
    |||||||||||| ||||||||||| |||||||| | ||||| |||||||| |||  ||||||||| ||||    
T  48351544 tacactttgaaaattgaacccacacaaagtagtgagacatatattgattttatccaataaaagagtgtgt 48351475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 25686842 - 25686960
Alignment:
Q  4 caacactctcttttgaacactatttttaatactcatcctattatt-atataaatcattgtaggtctactacactttg-aaattgaacccacataaagtag 101  Q
    ||||||||||||||||||| | ||| ||||||||||  | |||||  | ||||||||||| |||   |||||||||| |||||||||||| | ||||| |    
T  25686842 caacactctcttttgaacattctttctaatactcattatcttattggtttaaatcattgtgggt---ctacactttgaaaattgaacccataaaaagtgg 25686938  T
Q  102 taaaacatacattgatttcatc 123  Q
    ||  ||||||||||||||||||    
T  25686939 tatgacatacattgatttcatc 25686960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 19840956 - 19841021
Alignment:
Q  70 ctacactttg-aaattgaacccacataaagtagtaaaacatacattgatttcatctgataaaagag 134  Q
    |||||||||| |||| ||||||||||||||| |||| |||||||||||||||| |  |||||||||    
T  19840956 ctacactttggaaatggaacccacataaagtggtaagacatacattgatttcaaccaataaaagag 19841021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 122
Target Start/End: Complemental strand, 6442338 - 6442221
Alignment:
Q  4 caacactctcttttgaacactatttttaatactcatcctattatt-atataaatcattgtaggtctactacactttg-aaattgaacccacataaagtag 101  Q
    ||||||| ||||||||||||||| |||||||||||  || |||||  | ||||||||||| |||   |||||||||| |||||||| || || ||| | |    
T  6442338 caacactttcttttgaacactatctttaatactcactcttttattggtttaaatcattgtgggt---ctacactttgaaaattgaatccccacaaaatgg 6442242  T
Q  102 taaaacatacattgatttcat 122  Q
    |  ||||||||||||||||||    
T  6442241 tggaacatacattgatttcat 6442221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 22786260 - 22786198
Alignment:
Q  70 ctacactttg-aaattgaacccacataaagtagtaaaacatacattgatttcatctgataaaa 131  Q
    |||||||||| |||| ||||||||||||||| || | |||||||||||||||| || ||||||    
T  22786260 ctacactttggaaatggaacccacataaagtggtgagacatacattgatttcacctaataaaa 22786198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 26703511 - 26703576
Alignment:
Q  70 ctacacttt-gaaattgaacccacataaagtagtaaaacatacattgatttcatctgataaaagag 134  Q
    ||||||||| ||||| ||||||||||||||| || | |||||||||||||||| |  |||||||||    
T  26703511 ctacactttagaaatggaacccacataaagtggtgagacatacattgatttcacccaataaaagag 26703576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 41508359 - 41508400
Alignment:
Q  82 attgaacccacataaagtagtaaaacatacattgatttcatc 123  Q
    |||||||||| |||||||||| ||| ||||||||||||||||    
T  41508359 attgaacccatataaagtagtgaaatatacattgatttcatc 41508400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 134
Target Start/End: Complemental strand, 11692287 - 11692223
Alignment:
Q  71 tacactttgaaa-ttgaacccacataaagtagtaaaacatacattgatttcatctgataaaagag 134  Q
    |||||||||||| ||||||| ||| ||||| |||  ||||||||||||||||||  |||||||||    
T  11692287 tacactttgaaaattgaacctacacaaagtggtaggacatacattgatttcatccaataaaagag 11692223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 12271058 - 12271030
Alignment:
Q  106 acatacattgatttcatctgataaaagag 134  Q
    |||||||||||||||||||||||||||||    
T  12271058 acatacattgatttcatctgataaaagag 12271030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 17354598 - 17354662
Alignment:
Q  70 ctacactttg-aaattgaacccacataaagtagtaaaacatacattgatttcatctgataaaaga 133  Q
    |||||||||| |||| ||||||||||||||| ||   ||||||||||||||||||  ||||||||    
T  17354598 ctacactttggaaatagaacccacataaagtggtgggacatacattgatttcatccaataaaaga 17354662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 6980127 - 6980256
Alignment:
Q  4 caacactctcttttgaacactatttttaatactcatcctattattatat-aaatcattgtaggtctactacactttgaaa-ttgaacccacataaagtag 101  Q
    ||||||||||||||||||||| | | |||||||||  || ||||||  | |||||||||| ||||||    ||||||||| |||||| |||| ||||| |    
T  6980127 caacactctcttttgaacactttctctaatactcactctcttattagttgaaatcattgtgggtctat---actttgaaaattgaactcacacaaagtgg 6980223  T
Q  102 taaaacatacattgatttcatctgataaaagag 134  Q
    || ||||||| |||||||||||  |||||||||    
T  6980224 tagaacataccttgatttcatccaataaaagag 6980256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 32211791 - 32211920
Alignment:
Q  4 caacactctcttttgaacactatttttaatactcatcctattatta-tataaatcattgtaggtctactacactttgaaattgaacccacataaagtagt 102  Q
    |||||||||||||| |||||| | ||||||  |||  || |||||  | ||||||||||| ||||||| || |||  ||||||||| |||| ||||||||    
T  32211791 caacactctcttttcaacactttctttaatgatcactctcttattggtttaaatcattgtgggtctac-ac-cttaaaaattgaactcacacaaagtagt 32211888  T
Q  103 aaaacatacattgatttcatctgataaaagag 134  Q
       ||||||||||||||||||| |||||||||    
T  32211889 tggacatacattgatttcatctaataaaagag 32211920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 50539222 - 50539168
Alignment:
Q  80 aaattgaacccacataaagtagtaaaacatacattgatttcatctgataaaagag 134  Q
    |||||||||||||||||||| ||  ||||||| |||||||||||  |||||||||    
T  50539222 aaattgaacccacataaagtggtggaacatactttgatttcatccaataaaagag 50539168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 28218119 - 28218184
Alignment:
Q  70 ctacactttgaaa-ttgaacccacataaagtagtaaaacatacattgatttcatctgataaaagag 134  Q
    ||||||||||||| ||||| ||||| ||||| || | ||||||||||||||||||  |||||||||    
T  28218119 ctacactttgaaaattgaatccacacaaagtggtgagacatacattgatttcatccaataaaagag 28218184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 34905509 - 34905380
Alignment:
Q  4 caacactctcttttgaacactatttttaatactcatcctattatta-tataaatcattgtaggtctactacactttgaaa-ttgaacccacataaagtag 101  Q
    ||||||||||||||||||||  | | |||||||||  || |||||  | ||||||||||| |||||||   ||||||||| ||||||||| | ||||| |    
T  34905509 caacactctcttttgaacaccctctctaatactcactctcttattggtttaaatcattgtgggtctac---actttgaaaattgaacccaaacaaagtgg 34905413  T
Q  102 taaaacatacattgatttcatctgataaaagag 134  Q
    |   ||||||||||||||||||  |||||||||    
T  34905412 tgggacatacattgatttcatccaataaaagag 34905380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 12785010 - 12785059
Alignment:
Q  70 ctacactttgaaa-ttgaacccacataaagtagtaaaacatacattgatt 118  Q
    ||||||||||||| ||||||  |||||||||||||| |||||||||||||    
T  12785010 ctacactttgaaaattgaactaacataaagtagtaagacatacattgatt 12785059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 5413808 - 5413873
Alignment:
Q  70 ctacactttg-aaattgaacccacataaagtagtaaaacatacattgatttcatctgataaaagag 134  Q
    |||||||||| |||||||||||||| ||||| ||   ||||||||||||||||||  |||||||||    
T  5413808 ctacactttgtaaattgaacccacacaaagtggtgggacatacattgatttcatccaataaaagag 5413873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 42224662 - 42224727
Alignment:
Q  70 ctacactttg-aaattgaacccacataaagtagtaaaacatacattgatttcatctgataaaagag 134  Q
    |||||||||| |||| ||||||||||||||| ||   |||||||||||||||| || |||||||||    
T  42224662 ctacactttggaaatggaacccacataaagtggtgggacatacattgatttcacctaataaaagag 42224727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 27985 - 27858
Alignment:
Q  4 caacactctcttttgaacactatttttaatactcatcctattatt-atataaatcattgtaggtctactacacttt-gaaattgaacccacataaagtag 101  Q
    |||||| |||||||||||||| | |||||||||||  || |||||  | ||||||||||| |||   ||||||||| ||||| ||||||||| ||||| |    
T  27985 caacaccctcttttgaacactctctttaatactcactctcttattggtttaaatcattgtgggt---ctacactttggaaatagaacccacacaaagtgg 27889  T
Q  102 taaaacatacattgatttcatctgataaaag 132  Q
    |   ||||||||||||| ||||  |||||||    
T  27888 tgggacatacattgattccatccaataaaag 27858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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