View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2729_low_23 (Length: 515)

Name: NF2729_low_23
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2729_low_23
NF2729_low_23
[»] chr5 (3 HSPs)
chr5 (1-391)||(19184868-19185257)
chr5 (440-506)||(19184753-19184819)
chr5 (440-486)||(2596595-2596641)
[»] chr3 (8 HSPs)
chr3 (1-391)||(44317002-44317394)
chr3 (1-391)||(13866282-13866674)
chr3 (40-391)||(49528420-49528787)
chr3 (440-506)||(49528305-49528371)
chr3 (440-506)||(44317443-44317509)
chr3 (468-506)||(13866176-13866214)
chr3 (327-361)||(12991638-12991672)
chr3 (440-476)||(50394147-50394183)
[»] chr7 (5 HSPs)
chr7 (1-391)||(4155871-4156262)
chr7 (440-506)||(4155754-4155820)
chr7 (440-486)||(40262832-40262878)
chr7 (41-83)||(40577838-40577880)
chr7 (440-503)||(38676865-38676929)
[»] chr6 (4 HSPs)
chr6 (41-391)||(6229000-6229349)
chr6 (1-391)||(17244926-17245332)
chr6 (440-506)||(6228885-6228951)
chr6 (468-506)||(17244820-17244858)
[»] chr2 (2 HSPs)
chr2 (41-391)||(23991538-23991888)
chr2 (440-506)||(23991422-23991488)
[»] chr8 (1 HSPs)
chr8 (440-502)||(15741420-15741483)
[»] chr1 (2 HSPs)
chr1 (440-486)||(38961260-38961306)
chr1 (440-503)||(43727472-43727536)


Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 19185257 - 19184868
Alignment:
Q  1 ttcagatctaaactcatcatcatcattccttnnnnnnnnccatttttggatctaaactcatcatcaccaatccttcataaaaaacaaactcattgaaaca 100  Q
    |||||||||||||||||||||||||||||||        | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19185257 ttcagatctaaactcatcatcatcattccttaaaaaaaac-attttcggatctaaactcatcatcaccaatccttcataaaaaacaaactcattgaaaca 19185159  T
Q  101 aaatagccacgacaaccacaacaaatcaaaagggcacgacacagtgttgattcatagctttagaaattcaattcgaaagaaagggcatgcagcaatatga 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  19185158 aaatagccacgacaaccacaacaaatcaaaagggcatgacacagtgttgattcatagccttagaaattcaattcaaaagaaagggcatgcagcaatatga 19185059  T
Q  201 aattgccgtttgaattaaagcaaataagtgcaacaacagtacaattataaataatgggaaggcaacatggaaagagatagagttttaaagagatatggtt 300  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||    
T  19185058 aattgtcgtttgaattaaagcaaataagtgcaacaacagtacaattataaatactggaaaggcagcatggaaagagatagagttttaaagagatatggtt 19184959  T
Q  301 ctggaatttgtatggaaagagatatagttttggaatttgtatggaaaagatattgggaagaagatgggttaggttatacatagaaacatga 391  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  19184958 ctggaatttgtatggaaagagatatagttttggaatttgtacggaaaggatattgggaagaagatgagttaggttatacatagaaacatga 19184868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 440 - 506
Target Start/End: Complemental strand, 19184819 - 19184753
Alignment:
Q  440 atgaagttctgggttcgtgcatgaattttatgagtttttgggtttttccttgctgttgttgatgatg 506  Q
    ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  19184819 atgaagttctgggtttgtgtatgaattttaagagtttttgggtttttccttgctgttgttgatgatg 19184753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 486
Target Start/End: Complemental strand, 2596641 - 2596595
Alignment:
Q  440 atgaagttctgggttcgtgcatgaattttatgagtttttgggttttt 486  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  2596641 atgaagttctgggtttgtgtatgaattttatgagtttttggattttt 2596595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 44317002 - 44317394
Alignment:
Q  1 ttcagatctaaactcatcatcatcattccttnnnnnnnn--ccatttttggatctaaactcatcatcaccaatccttcataaaaaacaaactcattgaaa 98  Q
    ||||||||||||| |||||||||||||||||          ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44317002 ttcagatctaaacccatcatcatcattccttaaaaaaaaaaccattttcggatctaaactcatcatcaccaatccttcataaaaaacaaactcattgaaa 44317101  T
Q  99 caaaatagccacgacaaccacaacaaatcaaaagggcacgacacagtgttgattcatagctttagaaattcaattcgaaagaaagggcatgcagcaatat 198  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||||||    
T  44317102 caaaatagccacgacaaacacaacaaatcaaaagggcacgacacattgttgattcatagcctaagaaattcaattcgaaagaaagggcatgcatcaatat 44317201  T
Q  199 gaaattgccgtttgaattaaagcaaataagtgcaacaacagtacaattataaataatgggaaggcaacatggaaagagatagagttttaaagagatatgg 298  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44317202 gaaattgtcgtttgaattaaagcaaataagtgcaacaacagtacaattataaataatgggaaggcaacatggaaagagatagagttttaaagagatatgg 44317301  T
Q  299 ttctggaatttgtatggaaagagatatagttttggaatttgtatggaaaagatattgggaagaagatgggttaggttatacatagaaacatga 391  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  44317302 ttctggaatttgtatggaaagagatatggttttggaatttgtatggaaaggatattgggaagaagatgagttaggttatacatagaaacatga 44317394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 13866674 - 13866282
Alignment:
Q  1 ttcagatctaaactcatcatcatcattccttnnnnnnnnc-catttttggatctaaactcatcatcaccaatccttcataaaaaa-caaactcattgaaa 98  Q
    ||||||||||||| |||||||||||||||||          |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13866674 ttcagatctaaacccatcatcatcattccttaaaaaaaaatcattttcggatctaaactcatcatcaccaatccttcataaaaaaacaaactcattgaaa 13866575  T
Q  99 caaaatagccacgacaaccacaacaaatcaaaagggcacgacacagtgttgattcatagctttagaaattcaattcgaaagaaagggcatgcagcaatat 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| ||||||    
T  13866574 caaaatagccacgacaaccacaacaaatcaaaagggcacgacacagtgttgattcatagcctaagaaattcaattcgaaagaaaaggcatgcatcaatat 13866475  T
Q  199 gaaattgccgtttgaattaaagcaaataagtgcaacaacagtacaattataaataatgggaaggcaacatggaaagagatagagttttaaagagatatgg 298  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13866474 gaaattgtcgtttgaattaaagcaaataagtgcaacaacagtacaattataaataatgggaagacaacatggaaagagatagagttttaaagagatatgg 13866375  T
Q  299 ttctggaatttgtatggaaagagatatagttttggaatttgtatggaaaagatattgggaagaagatgggttaggttatacatagaaacatga 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  13866374 ttctggaatttgtatggaaagagatatagttttggaatttgtatggaaaggatattgggaagaagatgagttaggttatacatagaaacatga 13866282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 40 - 391
Target Start/End: Complemental strand, 49528787 - 49528420
Alignment:
Q  40 ccatttttggatctaaactcatcatcaccaatccttcataaaaaacaaactcattgaaacaaaatagccacgacaaccacaacaaatcaaaagggcacga 139  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49528787 ccattttcggatctaaactcatcatcaccaatccttcataaaaaacaaactcattgaaacaaaatagccacgacaaccacaacaaatcaaaagggcacga 49528688  T
Q  140 cacagtgttgattcatagctttagaaattcaattcgaaagaaagggcatgcagcaatatgaaattgccgtttgaattaaagcaaataagtgcaacaacag 239  Q
    |||| |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||    
T  49528687 cacaatgttgattcatagcctaagaaattcaattcgaaagaaagggcatgcatcaatatgaaattgtcgtttaaattaaagcaaataagtgcaacaacag 49528588  T
Q  240 tacaattataaataatgggaaggcaacatggaaagagatagagttttaaaga----------------gatatggttctggaatttgtatggaaagagat 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||| |||||||||    
T  49528587 tacaattataaataatgggaaggcaacatggaaagagatagagttttaaagagatagagttttaaagagatatggttctggaatttgtattgaaagagat 49528488  T
Q  324 atagttttggaatttgtatggaaaagatattgggaagaagatgggttaggttatacatagaaacatga 391  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  49528487 atagttttggaatttgtatggaaaggatattgggaagaagatgagttaggttatacatagaaacatga 49528420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 440 - 506
Target Start/End: Complemental strand, 49528371 - 49528305
Alignment:
Q  440 atgaagttctgggttcgtgcatgaattttatgagtttttgggtttttccttgctgttgttgatgatg 506  Q
    ||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  49528371 atgaagttctgggtttgtgtatgaattttatgaatttttgggtttttccttgctgttgttgatgatg 49528305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 440 - 506
Target Start/End: Original strand, 44317443 - 44317509
Alignment:
Q  440 atgaagttctgggttcgtgcatgaattttatgagtttttgggtttttccttgctgttgttgatgatg 506  Q
    |||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  44317443 atgaagttctaggtttgtgtatgaattttatgaatttttgggtttttccttgctgttgttgatgatg 44317509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 506
Target Start/End: Complemental strand, 13866214 - 13866176
Alignment:
Q  468 tatgagtttttgggtttttccttgctgttgttgatgatg 506  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  13866214 tatgaatttttgggtttttccttgctgttgttgatgatg 13866176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 12991672 - 12991638
Alignment:
Q  327 gttttggaatttgtatggaaaagatattgggaaga 361  Q
    ||||||||||||||||||||||||||||| |||||    
T  12991672 gttttggaatttgtatggaaaagatattgcgaaga 12991638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 476
Target Start/End: Original strand, 50394147 - 50394183
Alignment:
Q  440 atgaagttctgggttcgtgcatgaattttatgagttt 476  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  50394147 atgaagttctgggtttgtgaatgaattttatgagttt 50394183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 4156262 - 4155871
Alignment:
Q  1 ttcagatctaaactcatcatcatcattccttnnnnnnnnc-catttttggatctaaactcatcatcaccaatccttcataaaaaacaaactcattgaaac 99  Q
    ||||||||||||| |||||||||||||||||          |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4156262 ttcagatctaaacccatcatcatcattccttaaaaaaaaatcattttcggatctaaactcatcatcaccaatccttcataaaaaacaaactcattgaaac 4156163  T
Q  100 aaaatagccacgacaaccacaacaaatcaaaagggcacgacacagtgttgattcatagctttagaaattcaattcgaaagaaagggcatgcagcaatatg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| ||||    
T  4156162 aaaatagccacgacaaccacaacaaatcaaaagggcacgacacagtgttgattcatagccttagaaattcaagtcaaaagaaagggcatgcagcattatg 4156063  T
Q  200 aaattgccgtttgaattaaagcaaataagtgcaacaacagtacaattataaataatgggaaggcaacatggaaagagatagagttttaaagagatatggt 299  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  4156062 aaattgtcgtttgaattaaagcaaataagtgcaacaacggtacaattataaataatggaaaggcagcatggaaagagatagagttttaaagagatatggt 4155963  T
Q  300 tctggaatttgtatggaaagagatatagttttggaatttgtatggaaaagatattgggaagaagatgggttaggttatacatagaaacatga 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||    
T  4155962 tctggaatttgtatggaaagagatatagttttggaatttgtatggaaaggatattgggaagaagatgagttaggttatacatggaaacatga 4155871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 440 - 506
Target Start/End: Complemental strand, 4155820 - 4155754
Alignment:
Q  440 atgaagttctgggttcgtgcatgaattttatgagtttttgggtttttccttgctgttgttgatgatg 506  Q
    |||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4155820 atgaagttatgggtttgtgtatgaattttatgagtttttgggtttttccttgctgttgttgatgatg 4155754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 486
Target Start/End: Complemental strand, 40262878 - 40262832
Alignment:
Q  440 atgaagttctgggttcgtgcatgaattttatgagtttttgggttttt 486  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||||    
T  40262878 atgaagttctgggtttgtgtatgaattttatgagtttctgggttttt 40262832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 40577880 - 40577838
Alignment:
Q  41 catttttggatctaaactcatcatcaccaatccttcataaaaa 83  Q
    |||||||||||||||||||||||||| |||||| ||| |||||    
T  40577880 catttttggatctaaactcatcatcatcaatccatcacaaaaa 40577838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 503
Target Start/End: Original strand, 38676865 - 38676929
Alignment:
Q  440 atgaagttctgggttcgtgcatgaattttatgagtttttgg-gtttttccttgctgttgttgatg 503  Q
    ||||||||||| ||| ||| ||||||||||||||||| |||  ||||| |||| |||||||||||    
T  38676865 atgaagttctgagtttgtgaatgaattttatgagtttctggatttttttcttgttgttgttgatg 38676929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 41 - 391
Target Start/End: Complemental strand, 6229349 - 6229000
Alignment:
Q  41 catttttggatctaaactcatcatcaccaatccttcataaaaaacaaactcattgaaacaaaatagccacgacaaccacaacaaatcaaaagggcacgac 140  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6229349 cattttcggatctaaactcatcatcaccaatccttcataaaaaacaaattcattgaaacaaaatagccacgaca-ccacaacaaatcaaaagggcacgac 6229251  T
Q  141 acagtgttgattcatagctttagaaattcaattcgaaagaaagggcatgcagcaatatgaaattgccgtttgaattaaagcaaataagtgcaacaacagt 240  Q
    |||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6229250 acagtgttgattcatagccttagaaattcaatttgaaagaaagggaatgcaacaatatgaaattgtcgtttgaattaaagcaaataagtgcaacaacagt 6229151  T
Q  241 acaattataaataatgggaaggcaacatggaaagagatagagttttaaagagatatggttctggaatttgtatggaaagagatatagttttggaatttgt 340  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6229150 acaattataaataatgggaagacaacatggaaagagatagagttttaaagagatatgattctggaatttgtatggaaagagatatagttttggaatttgt 6229051  T
Q  341 atggaaaagatattgggaagaagatgggttaggttatacatagaaacatga 391  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  6229050 atggaaaggatattgggaagaagatgagttaggttatacatagaaacatga 6229000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 17245332 - 17244926
Alignment:
Q  1 ttcagatctaaactcatcatcatcattccttnnnnnnnnccatttttggatctaaactcatcatcaccaatccttcataaaaaacaaactcattgaaaca 100  Q
    |||||||||||||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17245332 ttcagatctaaactcatcatcatcattccttaaaaaaaaccattttcggatctaaactcatcatcaccaatccttcataaaaaacaaactcattgaaaca 17245233  T
Q  101 aaatagccacgacaaccacaacaaatcaaaagggcacgacacagtgttgattcatagctttagaaattcaattcgaaagaaagggcatgcagcaatatga 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| || ||||||||    
T  17245232 aaatagccacgacaaccacaacaaatcaaaagggcaagacacagtgttgattcatagcctaagaaattcaattcgaaagaaagggcatacatcaatatga 17245133  T
Q  201 aattgccgtttgaattaaagcaaataagtgcaacaacagtacaattataaataatgggaaggcaacatggaaagagatagagttttaaaga--------- 291  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  17245132 aattgtcgtttgaattaaagcaaataagtgcaacaacagtacaattataaataatgggaaggcaacatggaaagagatagagttttaaagagatagagtt 17245033  T
Q  292 -------gatatggttctggaatttgtatggaaagagatatagttttggaatttgtatggaaaagatattgggaagaagatgggttaggttatacataga 384  Q
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  17245032 ttaaagagatatggttctggaatttgtatagaaagagatatagttttggaatttgtatggaaaggatattgggaagaagatgagttaggttatacataga 17244933  T
Q  385 aacatga 391  Q
    |||||||    
T  17244932 aacatga 17244926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 440 - 506
Target Start/End: Complemental strand, 6228951 - 6228885
Alignment:
Q  440 atgaagttctgggttcgtgcatgaattttatgagtttttgggtttttccttgctgttgttgatgatg 506  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  6228951 atgaagttctgggtttgtgtatgaattttatgagtttttgggttttttcttgctgttgttgatgatg 6228885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 506
Target Start/End: Complemental strand, 17244858 - 17244820
Alignment:
Q  468 tatgagtttttgggtttttccttgctgttgttgatgatg 506  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  17244858 tatgagtttttggttttttccttgctgttgttgatgatg 17244820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 41 - 391
Target Start/End: Complemental strand, 23991888 - 23991538
Alignment:
Q  41 catttttggatctaaactcatcatcaccaatccttcataaaaaacaaactcattgaaacaaaatagccacgacaaccacaacaaatcaaaagggcacgac 140  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23991888 catttttggatctaaactcatcatccccaatccttcataaaaaaccaactcattgaaacaaaatagccacgacaaccacaacaaatcaaaagggcacgac 23991789  T
Q  141 acagtgttgattcatagctttagaaattcaattcgaaagaaagggcatgcagcaatatgaaattgccgtttgaattaaagcaaataagtgcaacaacagt 240  Q
    |||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  23991788 acagtgttgattcatagtcttagaaattcaattcaaaagaaagggcatgcagcaatatgaaattgtggtttgaattaaagcaaataagtgcaacaacagt 23991689  T
Q  241 acaattataaataatgggaaggcaacatggaaagagatagagttttaaagagatatggttctggaatttgtatggaaagagatatagttttggaatttgt 340  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23991688 acaattataaataatgggaaggcagcatggaaatagatagagttttaaagagatatggttctggaatttgtatggaaagagatatagttttggaatttgt 23991589  T
Q  341 atggaaaagatattgggaagaagatgggttaggttatacatagaaacatga 391  Q
    ||||||| |||||| |||||||| |  ||||| ||||||||||||| ||||    
T  23991588 atggaaaggatattaggaagaaggtaagttagcttatacatagaaaaatga 23991538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 440 - 506
Target Start/End: Complemental strand, 23991488 - 23991422
Alignment:
Q  440 atgaagttctgggttcgtgcatgaattttatgagtttttgggtttttccttgctgttgttgatgatg 506  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  23991488 atgaagttctcggtttgtgtatgaattttatgagtttttgggttttttcttgctgttgttgatgatg 23991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 502
Target Start/End: Original strand, 15741420 - 15741483
Alignment:
Q  440 atgaagttctgggttcgtgcatgaattttatgagtttttggg-tttttccttgctgttgttgat 502  Q
    ||||||||||||||| ||| ||||||||||||||||| |||| ||||| ||||||| |||||||    
T  15741420 atgaagttctgggtttgtgtatgaattttatgagtttctgggtttttttcttgctgctgttgat 15741483  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 486
Target Start/End: Complemental strand, 38961306 - 38961260
Alignment:
Q  440 atgaagttctgggttcgtgcatgaattttatgagtttttgggttttt 486  Q
    |||||||| |||||| ||| ||||||||||||||||| |||||||||    
T  38961306 atgaagttttgggtttgtgtatgaattttatgagtttctgggttttt 38961260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 440 - 503
Target Start/End: Complemental strand, 43727536 - 43727472
Alignment:
Q  440 atgaagttctgggttcgtgcatgaattttatgagtttttgg-gtttttccttgctgttgttgatg 503  Q
    |||||||||||| || ||| ||||||||||||||||| |||  ||||| |||| |||||||||||    
T  43727536 atgaagttctggatttgtgtatgaattttatgagtttctggatttttttcttgttgttgttgatg 43727472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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