View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_25 (Length: 487)
Name: NF2729_low_25
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 14 - 471
Target Start/End: Complemental strand, 31202193 - 31201733
Alignment:
| Q |
14 |
cagagaaatattacgagttaatatgcaattttgtcaacaaaaccaaagcctcattaggagtgatttggaacacctttgaagacttggaatcattaccact |
113 |
Q |
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| T |
31202193 |
cagagaaatattacgagttaatatgcaattttgtcaacaaaaccaaagcctcattaggagtgatttggaacacctttgaagacttggaatcattaccact |
31202094 |
T |
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| Q |
114 |
atca---ctaagccaacaattttcaattccaatgttcccaataggaccttttcacaagtatttccctactaacaatacatcttcttctagcagcttaata |
210 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202093 |
atcaacactaagccaacaattttcaattccaatgttcccaataggaccttttcacaagtatttccctactaacaatacatcttcttctagcagcttaata |
31201994 |
T |
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| Q |
211 |
ccacaagaccaaaattgcatttcatggttaaacaaacacaaaccaaaatctgtggtttatgtgagttttggaagtgtagcttcaataaccgaggcggagt |
310 |
Q |
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| T |
31201993 |
ccacaagaccaaaattgcatttcatggttaaacaaacacaaaccaaaatctgtggtttatgtgagttttggaagtgtagcttcaataaccgaggcggagt |
31201894 |
T |
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| Q |
311 |
ttttggagatagcttggggtttagtcaacagtaattatccgtttttgtgggtggttcgaccgggactaatcgatggccacgagtggctcaggcctttgcc |
410 |
Q |
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| T |
31201893 |
ttttggagatagcttggggtttagtcaacagtaattatccgtttttgtgggtggttagaccgggactaatcggtggccacgagtggcttgggccgttgcc |
31201794 |
T |
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| Q |
411 |
aaatgagttcatggagaatttagaaggtagaggctatatagtgaaatgggcaccacaacaa |
471 |
Q |
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| T |
31201793 |
aaatgggttcatggagaatttagaaggtagaggctatatagtgaaatgggcaccacaacaa |
31201733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 31209823 - 31209871
Alignment:
| Q |
293 |
caataaccgaggcggagtttttggagatagcttggggtttagtcaacag |
341 |
Q |
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|||||| |||||| ||||| ||||||||||||||||| ||||||||||| |
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| T |
31209823 |
caataagcgaggccgagttcttggagatagcttgggggttagtcaacag |
31209871 |
T |
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