View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_3 (Length: 877)
Name: NF2729_low_3
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 792; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 792; E-Value: 0
Query Start/End: Original strand, 16 - 866
Target Start/End: Original strand, 10398911 - 10399762
Alignment:
| Q |
16 |
catcaagttccaaccctcttcaaagtgatccacaaaaaaccatgaatcctcttgaccttgaagaattcaaaagacaaggatacattatgattgatttcct |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10398911 |
catcaagttccaaccctcctcaaagtgatccacaaaaaaccatgaatcctcttgaccttgaagaattcaaaagacaaggatacatgatgattgatttcct |
10399010 |
T |
|
| Q |
116 |
tacagattattacaaaaacattgaaaactatcctgttttaagtaaagtagaacctggttatcttgcaaaaatattaccatcttcagctccatttcaacca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10399011 |
tacagattattacaaaaacattgaaaactatcctgttttaagtaaagtagaacctggttatcttgcaaaaatattaccatcttcagctccatttcaacca |
10399110 |
T |
|
| Q |
216 |
gaatcaattgaatcaatacttgaagatgttcaacaacatataatccctggtatcacacattggatgagtccaaattattatgcttacttccctagtagtg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10399111 |
gaatcaattgaatcaatacttgaagatgttcaacaacatataatccctggtatcacacattggatgagtccaaattattatgcttacttccctagtagtg |
10399210 |
T |
|
| Q |
316 |
gtagcatagcagggtttataggtgaaatgttaagcactggattcaatgttgttggattcaattggttatcttcatcagctgcaactgagcttgaaactat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
10399211 |
gtagcatagcagggtttataggtgaaatgttaagcactggattcaatgttgttggattcaattggttatcatcaccagctgcaactgagcttgaaactat |
10399310 |
T |
|
| Q |
416 |
tgttatgaattggcttggaaaattgctaaatttacccaaaagtttcattttttcatcaaatattaagggtggtggtggtgtgttattaggtacaacttgt |
515 |
Q |
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| T |
10399311 |
tgttatgaattggcttggaaaattgctaaatttacccaaaagtttcattttttcatcaaatattaagggtggtggtggtgtgttattaggtacaacttgt |
10399410 |
T |
|
| Q |
516 |
gaggctattttgtgtacactagttgctgcaagagat-aaaaaactttctcaaattggaaaggacgatattggaaaacttgttgtgtattgttctgatcaa |
614 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10399411 |
gaggctattttgtgtaccctagttgctgcaagagataaaaaaactttctcaaattggaaaggacaatattggaaaacttgttgtgtattgttctgatcaa |
10399510 |
T |
|
| Q |
615 |
acacatagtgcacttcaaaaagcttctcaaattgttggaattaattcagaaaattttagagtcataaaaacaaaaggatcaaatttatttgctttgtccc |
714 |
Q |
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| T |
10399511 |
acacatagtgcacttcaaaaagcaactcaaattgttggaattcattcagaaaattttagagtcataaaaacaaaaggatcaaatttatttgctttgtccc |
10399610 |
T |
|
| Q |
715 |
ccgactctttgctttcgacaattcttttagacgttgaaaatggtttggttccttgttttttatgcgctactattggaacaacttcaacaaatgcggttga |
814 |
Q |
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| T |
10399611 |
ccgactctttgctttcgacaattcttttagacgttgacaatggtttgattccttattttttatgcgctactattggaacaacttcaacaaatgccgttga |
10399710 |
T |
|
| Q |
815 |
tcctataaagttgttgtgtaatgtgacaaaagaatacgatatttgggttcat |
866 |
Q |
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| T |
10399711 |
tcctataaagttgttgtgtaatgtgacaaaagaatacgatatttgggttcat |
10399762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 6e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 234 - 433
Target Start/End: Original strand, 21197605 - 21197804
Alignment:
| Q |
234 |
cttgaagatgttcaacaacatataatccctggtatcacacattggatgagtccaaattattatgcttacttccctagtagtggtagcatagcagggttta |
333 |
Q |
| |
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||||||||| |||| || | |||||||| ||||| ||||||||| ||||| ||||| | |||||| || || |||||||||| ||||||||| |
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| T |
21197605 |
cttgaagattatcaaaaatacataatcccaggtataacacattggcaaagtcctaattactttgcttattttccatcaagtggtagcacagcagggttct |
21197704 |
T |
|
| Q |
334 |
taggtgaaatgttaagcactggattcaatgttgttggattcaattggttatcttcatcagctgcaactgagcttgaaactattgttatgaattggcttgg |
433 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||||| || ||| | || ||| ||||||| || || || |||| | ||||||| |||||||||| |
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| T |
21197705 |
taggagaaatgttaagcactggattgaatgttgttggatttaactggatttcatcaccagctgctacagaactagaaaatgttgttatagattggcttgg |
21197804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 21197448 - 21197540
Alignment:
| Q |
77 |
agaattcaaaagacaaggatacattatgattgatttccttacagattattacaaaaacattgaaaactatcctgttttaagtaaagtagaacc |
169 |
Q |
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||||||||| | |||||| |||| ||||||||||||||| | |||||||| |||||||| |||||||||||| ||||| |||||||||| |
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| T |
21197448 |
agaattcaagaaacaaggtcacatgatgattgatttccttgctgattattatgaaaacatttcaaactatcctgtcctaagtcaagtagaacc |
21197540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 483 - 637
Target Start/End: Original strand, 21197845 - 21197999
Alignment:
| Q |
483 |
ggtggtggtggtgtgttattaggtacaacttgtgaggctattttgtgtacactagttgctgcaagagataaaaaactttctcaaattggaaaggacgata |
582 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||| | ||||||| | || || |||| ||| |||||||||| ||| ||||||| | || || |
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| T |
21197845 |
ggtggtggtggtgttttattaggcacaacctgtgaaggtattttgggaactcttgttgttgctagagataaaattcttagcaaaattggtagtgaaaatg |
21197944 |
T |
|
| Q |
583 |
ttggaaaacttgttgtgtattgttctgatcaaacacatagtgcacttcaaaaagc |
637 |
Q |
| |
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| T |
21197945 |
caggtaaacttgttgtttatggctctgatcaaacacattgtgcagttcaaaaagc |
21197999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 234 - 433
Target Start/End: Original strand, 11014539 - 11014738
Alignment:
| Q |
234 |
cttgaagatgttcaacaacatataatccctggtatcacacattggatgagtccaaattattatgcttacttccctagtagtggtagcatagcagggttta |
333 |
Q |
| |
|
||||||||| |||| | || |||||||| ||||| ||||||||| ||||||||||| | |||||| || || |||||||||| ||||||||| |
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| T |
11014539 |
cttgaagattatcaaaagcacataatcccaggtataacacattggcaaagtccaaattactttgcttattttccctcaagtggtagcacagcagggttct |
11014638 |
T |
|
| Q |
334 |
taggtgaaatgttaagcactggattcaatgttgttggattcaattggttatcttcatcagctgcaactgagcttgaaactattgttatgaattggcttgg |
433 |
Q |
| |
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|||| ||||| || ||||||||||| |||||||||||||| || ||| | || ||| |||||||||| || || |||| | ||||||| |||||||||| |
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| T |
11014639 |
taggagaaatattgagcactggattgaatgttgttggatttaactggatttcatcaccagctgcaacagaactagaaaatgttgttatagattggcttgg |
11014738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 234 - 433
Target Start/End: Original strand, 11004211 - 11004410
Alignment:
| Q |
234 |
cttgaagatgttcaacaacatataatccctggtatcacacattggatgagtccaaattattatgcttacttccctagtagtggtagcatagcagggttta |
333 |
Q |
| |
|
||||||||| |||| | || |||||||| ||||| ||||||||| ||||||||||| | |||||| || || |||||||||| ||||||||| |
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| T |
11004211 |
cttgaagattatcaaaagcacataatcccaggtataacacattggcaaagtccaaattactttgcttattttccctcaagtggtagcacagcagggttct |
11004310 |
T |
|
| Q |
334 |
taggtgaaatgttaagcactggattcaatgttgttggattcaattggttatcttcatcagctgcaactgagcttgaaactattgttatgaattggcttgg |
433 |
Q |
| |
|
|||| ||||| || ||||||||||| |||||||||||||| || ||| | || ||| ||||||| || || || |||| | ||||||| |||||||||| |
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| T |
11004311 |
taggagaaatattgagcactggattgaatgttgttggatttaactggatttcatcaccagctgccacagaactagaaaatgttgttatagattggcttgg |
11004410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 483 - 555
Target Start/End: Original strand, 11004451 - 11004523
Alignment:
| Q |
483 |
ggtggtggtggtgtgttattaggtacaacttgtgaggctattttgtgtacactagttgctgcaagagataaaa |
555 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| | ||||||| | || |||||| ||| |||||||||| |
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| T |
11004451 |
ggtggtggtggtgttttattaggtacaacttgtgaaggtattttgggaactttagttgttgctagagataaaa |
11004523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 483 - 555
Target Start/End: Original strand, 11014779 - 11014851
Alignment:
| Q |
483 |
ggtggtggtggtgtgttattaggtacaacttgtgaggctattttgtgtacactagttgctgcaagagataaaa |
555 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| | ||||||| | || |||||| ||| |||||||||| |
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|
| T |
11014779 |
ggtggtggtggtgttttattaggtacaacttgtgaaggtattttgggaactttagttgttgctagagataaaa |
11014851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 637
Target Start/End: Original strand, 11004556 - 11004605
Alignment:
| Q |
588 |
aaacttgttgtgtattgttctgatcaaacacatagtgcacttcaaaaagc |
637 |
Q |
| |
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||||||||||| ||| | ||||||||||||||| ||||| |||||||||| |
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| T |
11004556 |
aaacttgttgtttatggctctgatcaaacacattgtgcagttcaaaaagc |
11004605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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