View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2729_low_31 (Length: 445)
Name: NF2729_low_31
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 20)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 10 - 430
Target Start/End: Complemental strand, 30477170 - 30476750
Alignment:
| Q |
10 |
agaagcaaaggtcaacaatggatccataataatgacattaaatttaaagtgtgggtcctagcactatcaccccagtgcttagtggatgttgctctaaatt |
109 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30477170 |
agaaacaaaagtcaacaatggatccataataatgacattaaatttaaagtgtgggtcctagcactatcaccccagtgcttagtggatgttgctctaaatt |
30477071 |
T |
|
| Q |
110 |
gaatcaaatctgcattttgttttattttccttcataatttccaactgatcacctaacagctgatattcctagtactcactaaaaatggcagaggccttgc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30477070 |
gaatcaaatctgcattttgttttattttccttcataatttccaactgatcacctaacagccgatattcctagtactaactaaaaatggcagaggccttgc |
30476971 |
T |
|
| Q |
210 |
taggagttgtatttgagaatttgttatctcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaaggctggaaagttgtcaaccaccttgga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30476970 |
taggagttgtatttgagaatttgttatctcttgttcaaaatgaatttgcaaccatttctggaatcacatcaaaggctgaaaagttgtcaaccaccttgga |
30476871 |
T |
|
| Q |
310 |
tctgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgctt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30476870 |
tctgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgctt |
30476771 |
T |
|
| Q |
410 |
gatgatattcttgatgaatgt |
430 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30476770 |
gatgatattcttgatgaatgt |
30476750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 194 - 426
Target Start/End: Original strand, 17417163 - 17417395
Alignment:
| Q |
194 |
atggcagaggccttgctaggagttgtatttgagaatttgttatctcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaaggctggaaagt |
293 |
Q |
| |
|
|||||||| ||||| || |||||||| |||||||||||||||||||| | |||||||||| ||||||||| || |||||| | ||||||| | |||| |
|
|
| T |
17417163 |
atggcagaagccttacttggagttgtgtttgagaatttgttatctctggttcaaaatgaaattgcaaccacttttggaattaagtcaaaggtcgaaaagc |
17417262 |
T |
|
| Q |
294 |
tgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactcaaaga |
393 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
17417263 |
tatcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcataaacaagtcacagatcgctctaacaaggtatggcttcaacaactcaaaga |
17417362 |
T |
|
| Q |
394 |
tgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
|| ||| |||||||| ||||||||||||||||| |
|
|
| T |
17417363 |
tgttgtttatgtgctagatgatattcttgatga |
17417395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 185 - 426
Target Start/End: Complemental strand, 29873794 - 29873553
Alignment:
| Q |
185 |
tcactaaaaatggcagaggccttgctaggagttgtatttgagaatttgttatctcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaagg |
284 |
Q |
| |
|
|||| ||||||||| | || ||||| |||||||| ||||| |||||| | ||||| ||||||||||||| | ||||||||||| |||| ||||||| |
|
|
| T |
29873794 |
tcacaaaaaatggctaacgctttgctcggagttgtgtttgaaaatttgatgtctctccttcaaaatgaattttctaccatttctggtatcaagtcaaagg |
29873695 |
T |
|
| Q |
285 |
ctggaaagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaaca |
384 |
Q |
| |
|
||| ||| | ||||||||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29873694 |
ctgaaaaactatcaaccaccttagatttgatcaaggctgttcttgaagatgctgaaaagaaacaagtcacagaccgctctattaaggtatggctacaaca |
29873595 |
T |
|
| Q |
385 |
actcaaagatgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
||||||||||| ||| |||||||| |||||||| |||||||| |
|
|
| T |
29873594 |
actcaaagatgttgtttatgtgctcgatgatatccttgatga |
29873553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 245 - 426
Target Start/End: Original strand, 30240939 - 30241120
Alignment:
| Q |
245 |
caaaatgaatttgcaaccatttctggaatcacatcaaaggctggaaagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcaga |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||| ||| ||||||| || |||||||||||||||||| ||| |
|
|
| T |
30240939 |
caaaatgaatttgcaaccatttctggaatcaagtcaaaggctcaaaagctgtcagacaccttagatatgatcaaagccgttcttgaagatgctgagaaga |
30241038 |
T |
|
| Q |
345 |
aacaggtcacagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||| |||||||| |
|
|
| T |
30241039 |
aacaagtcacagactgctctattaaggtatggctgcaacaactcaaagatgttgtttatgtgctcgatgatatccttgatga |
30241120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 245 - 426
Target Start/End: Complemental strand, 29854871 - 29854690
Alignment:
| Q |
245 |
caaaatgaatttgcaaccatttctggaatcacatcaaaggctggaaagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcaga |
344 |
Q |
| |
|
|||| ||||||| ||||||||||| |||||| |||||||||| ||| | ||||||||||| ||| ||||||| |||||||||||||||||||| ||| |
|
|
| T |
29854871 |
caaagtgaattttcaaccatttctagaatcaagtcaaaggctgaaaaactatcaaccaccttagatttgatcaatgctgttcttgaagatgctgaaaaga |
29854772 |
T |
|
| Q |
345 |
aacaggtcacagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
29854771 |
aacaagtcacagaccactctattaaggtatggctacaacaactcaaagatgctgtttatgtgctcgatgatatccttgatga |
29854690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 234 - 426
Target Start/End: Original strand, 30520160 - 30520352
Alignment:
| Q |
234 |
tatctcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaaggctggaaagttgtcaaccaccttggatctgatcaaggctgttcttgaaga |
333 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || |||||| |||| | ||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
30520160 |
tatctcttgttcaaaatgaatttgcaaccatttctggaatcaagtccaaggctctaaagctatcaaccaccttagatttgatcaaggccgttcttgaaga |
30520259 |
T |
|
| Q |
334 |
tgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
||||||| ||||||| | |||||||||||||| ||||||||||| ||||||||||||||||| | || | || ||||||||||||||||| |
|
|
| T |
30520260 |
tgctgagaagaaacaaataacagaccgctctataaaggtatggcttcaacaactcaaagatgcaatctacatactagatgatattcttgatga |
30520352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 234 - 426
Target Start/End: Original strand, 30560500 - 30560692
Alignment:
| Q |
234 |
tatctcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaaggctggaaagttgtcaaccaccttggatctgatcaaggctgttcttgaaga |
333 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || |||||| |||| | ||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
30560500 |
tatctcttgttcaaaatgaatttgcaaccatttctggaatcaagtccaaggctctaaagctatcaaccaccttagatttgatcaaggccgttcttgaaga |
30560599 |
T |
|
| Q |
334 |
tgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
||||||| ||||||| | |||||||||||||| ||||||||||| ||||||||||||||||| | || | || ||||||||||||||||| |
|
|
| T |
30560600 |
tgctgagaagaaacaaataacagaccgctctataaaggtatggcttcaacaactcaaagatgcaatctacatactagatgatattcttgatga |
30560692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 189 - 426
Target Start/End: Original strand, 30329331 - 30329568
Alignment:
| Q |
189 |
taaaaatggcagaggccttgctaggagttgtatttgagaatttgttatctcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaaggctgg |
288 |
Q |
| |
|
|||| ||| |||||||||| || || |||| |||||||||||| || ||||||| ||||| ||||| | |||||||||| |||||| | || ||| |
|
|
| T |
30329331 |
taaatatgacagaggccttacttggtgttgcatttgagaatttattgtctcttgttcaaagtgaatgttcaaccatttcctgaatcaagtttaatgctca |
30329430 |
T |
|
| Q |
289 |
aaagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactc |
388 |
Q |
| |
|
|||| | ||||||||||| ||||| ||||||| |||||||||||||| |||||| || || ||| ||||||||||||||||| ||||||| |||||| || |
|
|
| T |
30329431 |
aaagctatcaaccaccttagatcttatcaaggttgttcttgaagatgttgagcataagcaagtctcagaccgctctattaagatatggcttcaacaaatc |
30329530 |
T |
|
| Q |
389 |
aaagatgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
30329531 |
aaagatgatatatatgtgcttgatgatatccttgatga |
30329568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 194 - 426
Target Start/End: Complemental strand, 30208133 - 30207901
Alignment:
| Q |
194 |
atggcagaggccttgctaggagttgtatttgagaatttgttatctcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaaggctggaaagt |
293 |
Q |
| |
|
||||| || ||||| || |||||||| || |||||||| ||||||| |||||||||||| || |||||||||||||||| || |||||| ||| |
|
|
| T |
30208133 |
atggctgacgccttacttggagttgtgttacagaatttgaagtctcttgttcaaaatgaattggccaccatttctggaatcaagtccaaggctcagaagc |
30208034 |
T |
|
| Q |
294 |
tgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactcaaaga |
393 |
Q |
| |
|
| ||||||||||| ||| || |||| |||||||||||||||||||||||||| || |||| | |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
30208033 |
tttcaaccaccttagatttggtcaacgctgttcttgaagatgctgagcagaagcaagtcatcaatcgctctataaaggtatggctacaacaactcaaaga |
30207934 |
T |
|
| Q |
394 |
tgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
|||||| |||||||| |||||||| |||||||| |
|
|
| T |
30207933 |
tgctgtttatgtgctcgatgatatccttgatga |
30207901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 190 - 426
Target Start/End: Complemental strand, 30437413 - 30437177
Alignment:
| Q |
190 |
aaaaatggcagaggccttgctaggagttgtatttgagaatttgttatctcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaaggctgga |
289 |
Q |
| |
|
||||||||| || |||| || |||||||| |||||||||||| ||||||| ||||||||||||| | || ||||||||||||| |||||||||| | |
|
|
| T |
30437413 |
aaaaatggctgatccctttcttggagttgtgtttgagaatttgatatctctgcttcaaaatgaattttctactatttctggaatcaagtcaaaggctgaa |
30437314 |
T |
|
| Q |
290 |
aagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactca |
389 |
Q |
| |
|
|| | ||||||||||| | | |||||||||||||||||||||||||| ||| ||| |||| |||| || |||||||||||||| ||| | |||| |
|
|
| T |
30437313 |
aacctatcaaccaccttagttgacatcaaggctgttcttgaagatgctgaaaagagacaagtcaaagacaacttcattaaggtatggctacaagacctca |
30437214 |
T |
|
| Q |
390 |
aagatgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
|||||||||| |||||||| ||||| || |||||||| |
|
|
| T |
30437213 |
aagatgctgtttatgtgctcgatgacatccttgatga |
30437177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 190 - 426
Target Start/End: Original strand, 30675779 - 30676015
Alignment:
| Q |
190 |
aaaaatggcagaggccttgctaggagttgtatttgagaatttgttatctcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaaggctgga |
289 |
Q |
| |
|
||||||||| || || ||||| |||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||||||||| ||||||| | | |
|
|
| T |
30675779 |
aaaaatggctgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttcaaccatttctggaatcaagtcaaaggttcaa |
30675878 |
T |
|
| Q |
290 |
aagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactca |
389 |
Q |
| |
|
||| | |||| || ||| | || ||||||||||||||||||||||||||| ||||||| ||| ||| | |||||||||| ||||| | ||| | |||| |
|
|
| T |
30675879 |
aagctatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttacaagacctca |
30675978 |
T |
|
| Q |
390 |
aagatgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
30675979 |
aagatgctgtttatgtgctcgatgatatccttgatga |
30676015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 245 - 426
Target Start/End: Complemental strand, 30401637 - 30401456
Alignment:
| Q |
245 |
caaaatgaatttgcaaccatttctggaatcacatcaaaggctggaaagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcaga |
344 |
Q |
| |
|
|||| ||||||| | |||||||||||||||| |||||||| ||| | |||||| |||| ||| ||| |||||||||||| |||||||||| ||| |
|
|
| T |
30401637 |
caaagtgaattttctaccatttctggaatcaagtcaaaggccaaaaacctatcaacctccttaaatcacatcgaggctgttcttgtagatgctgagaaga |
30401538 |
T |
|
| Q |
345 |
aacaggtcacagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
||| |||| |||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
30401537 |
gacaagtcaaagacagctatattaaggtatggctccaacaactcaaagatgctgtttatgtgctcgatgatatccttgatga |
30401456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 193 - 426
Target Start/End: Complemental strand, 30751258 - 30751025
Alignment:
| Q |
193 |
aatggcagaggccttgctaggagttgtatttgagaatttgttatctcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaaggctggaaag |
292 |
Q |
| |
|
|||||| || || ||||| |||||||| ||||| |||||| ||||| ||||||||||||| |||||||||||||||| | ||||||||| |||| |
|
|
| T |
30751258 |
aatggctgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttcaaccatttctggaattaagtcaaaggctcaaaag |
30751159 |
T |
|
| Q |
293 |
ttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactcaaag |
392 |
Q |
| |
|
| ||| || ||| | || ||||||||||||||||||||||||||| ||||||| ||| ||| | |||||||||| ||||| | ||| | ||||||| |
|
|
| T |
30751158 |
ctatcagacaacttagttcgcatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttacaagacctcaaag |
30751059 |
T |
|
| Q |
393 |
atgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||| |
|
|
| T |
30751058 |
atgctgtttatgtgctcgatgatatccttgatga |
30751025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 190 - 426
Target Start/End: Original strand, 30337016 - 30337252
Alignment:
| Q |
190 |
aaaaatggcagaggccttgctaggagttgtatttgagaatttgttatctcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaaggctgga |
289 |
Q |
| |
|
||||||||| || || ||||| |||||||| ||||| |||||| |||| ||||||||||||| |||||||||||||||| | ||||||||| | |
|
|
| T |
30337016 |
aaaaatggccgacgctttgcttggagttgtgtttgaaaatttgacggctctccatcaaaatgaattttcaaccatttctggaattaagtcaaaggctcaa |
30337115 |
T |
|
| Q |
290 |
aagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactca |
389 |
Q |
| |
|
||| | ||| || ||| | || ||||||||||||||||||||||||||| ||||||| ||| ||| | |||||||||| ||||| | ||| | |||| |
|
|
| T |
30337116 |
aagctatcagacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttacaagacctca |
30337215 |
T |
|
| Q |
390 |
aagatgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
30337216 |
aagatgctgtttatgtgctcgatgatatccttgatga |
30337252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 206 - 426
Target Start/End: Complemental strand, 30485000 - 30484780
Alignment:
| Q |
206 |
ttgctaggagttgtatttgagaatttgttatctcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaaggctggaaagttgtcaaccacct |
305 |
Q |
| |
|
||||| |||||||| || || |||||| |||||| ||||||||||||| |||||||||||||||||| ||||||||| |||| | ||| || || |
|
|
| T |
30485000 |
ttgcttggagttgtgttcgaaaatttgacatctctccttcaaaatgaattttcaaccatttctggaatcaagtcaaaggctcaaaagctatcagacaact |
30484901 |
T |
|
| Q |
306 |
tggatctgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgt |
405 |
Q |
| |
|
| | || ||||| ||||||||||||||||||||| ||||||| ||| ||| | |||||||||| ||||| | ||| | |||||||||||||| ||||| |
|
|
| T |
30484900 |
tagttcacatcaaagctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttacaagacctcaaagatgctgtttatgt |
30484801 |
T |
|
| Q |
406 |
gcttgatgatattcttgatga |
426 |
Q |
| |
|
||| |||||||| |||||||| |
|
|
| T |
30484800 |
gctcgatgatatccttgatga |
30484780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 426
Target Start/End: Original strand, 30711973 - 30712155
Alignment:
| Q |
244 |
tcaaaatgaatttgcaaccatttctggaatcacatcaaaggctggaaagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcag |
343 |
Q |
| |
|
||||||||||||| | |||||||||||||||| |||||||| | |||| | ||| || ||| | || ||||||||||||||||||||||||||| || |
|
|
| T |
30711973 |
tcaaaatgaattttctaccatttctggaatcaaatcaaaggttcaaaagctatcagacaacttagttcacatcaaggctgttcttgaagatgctgagaag |
30712072 |
T |
|
| Q |
344 |
aaacaggtcacagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
||||| ||| ||| | |||||||||| ||||| | ||| | |||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
30712073 |
aaacaattcaaagaactctctattaagctatggttacaagacctcaaagatgctgtttatgtgctcgatgatatccttgatga |
30712155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 190 - 426
Target Start/End: Complemental strand, 30061987 - 30061751
Alignment:
| Q |
190 |
aaaaatggcagaggccttgctaggagttgtatttgagaatttgttatctcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaaggctgga |
289 |
Q |
| |
|
||||||||| || || ||||| |||||||| ||||| |||||| |||| ||||||||||||| |||||||||||||||| | ||||||| | | |
|
|
| T |
30061987 |
aaaaatggccgacgctttgcttggagttgtgtttgaaaatttgacggctctccttcaaaatgaattttcaaccatttctggaattaagtcaaaggttcaa |
30061888 |
T |
|
| Q |
290 |
aagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactca |
389 |
Q |
| |
|
||| | |||| || ||| | || ||||||||||||||||||||||||||| ||||||| ||| ||| | |||||||||| ||||| | ||| | |||| |
|
|
| T |
30061887 |
aagctatcaaacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagctatggttacaagacctca |
30061788 |
T |
|
| Q |
390 |
aagatgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
|||||| ||| |||||||| |||||||| |||||||| |
|
|
| T |
30061787 |
aagatggtgtttatgtgctcgatgatatccttgatga |
30061751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 238 - 430
Target Start/End: Complemental strand, 17984457 - 17984265
Alignment:
| Q |
238 |
tcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaaggctggaaagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgct |
337 |
Q |
| |
|
|||||||||||||||||||||||| | |||| ||||| |||||||||| ||| | ||||||||||| || || || || |||||||| ||||| ||| |
|
|
| T |
17984457 |
tcttgctcaaaatgaatttgcaactctatctgcaatcaagtcaaaggctgaaaaactatcaaccaccttagaacttattaatgctgttctcgaagacgct |
17984358 |
T |
|
| Q |
338 |
gagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgcttgatgatattcttgatgaatgt |
430 |
Q |
| |
|
|| |||| || | ||||| || |||||| | ||||||| || |||||||||||||| || | ||||||||||||||| || ||||||||| |
|
|
| T |
17984357 |
gaaaagaagcatttgacagatcgttctattcaaatatggctgcagcaactcaaagatgcggtgtttgtgcttgatgatatcctagatgaatgt |
17984265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 29614302 - 29614372
Alignment:
| Q |
314 |
atcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaaca |
384 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||| |||||||| ||||||| ||||||||||| ||||| |
|
|
| T |
29614302 |
atcaaggccgttcttgaagatgttgagcacaaacatatcacagacggctctataaaggtatggctacaaca |
29614372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 429
Target Start/End: Original strand, 29608142 - 29608260
Alignment:
| Q |
314 |
atcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactcaaagatgctgtata---tgtgcttg |
410 |
Q |
| |
|
|||||||| |||||||||||||| |||| ||||| ||||||| ||||||| ||||||||||| |||||| |||| ||||| || || ||||| | |
|
|
| T |
29608142 |
atcaaggcccttcttgaagatgctcagcacaaacaaatcacagatggctctataaaggtatggctacaacaattcaaggatgcagtttacgtagtgctcg |
29608241 |
T |
|
| Q |
411 |
atgatattcttgatgaatg |
429 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
29608242 |
atgatattcttgatcaatg |
29608260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 190 - 426
Target Start/End: Original strand, 25292438 - 25292674
Alignment:
| Q |
190 |
aaaaatggcagaggccttgctaggagttgtatttgagaatttgttatctcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaaggctgga |
289 |
Q |
| |
|
||||||||| || || || || |||||||||||||||||| |||| || || ||||||||||||||||||||||||| |||||| ||||| |||| | |
|
|
| T |
25292438 |
aaaaatggcggacgcattacttggagttgtatttgagaatatgttgtccctgcttcaaaatgaatttgcaaccatttctagaatcaagtcaaaagctgaa |
25292537 |
T |
|
| Q |
290 |
aagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactca |
389 |
Q |
| |
|
||| | |||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
25292538 |
aagctatcaatcaccttggatctgatataggctgttcttgaagatgctgagcagaaacaagtcacagatcgctctattaaggtatggctacaacaactca |
25292637 |
T |
|
| Q |
390 |
aagatgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
|||||| |||||||||||| |||||||| |||||||| |
|
|
| T |
25292638 |
aagatgttgtatatgtgctcgatgatatccttgatga |
25292674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 244 - 430
Target Start/End: Complemental strand, 52353522 - 52353336
Alignment:
| Q |
244 |
tcaaaatgaatttgcaaccatttctggaatcacatcaaaggctggaaagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcag |
343 |
Q |
| |
|
||||||||||||| | ||| | ||| ||||| ||||| |||| ||| |||||| ||| || ||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
52353522 |
tcaaaatgaattttccaccgtatcttcaatcaagtcaaaagctgaaaacctgtcaaacacgttagatctcatcaaggcagttcttgaagatgctgagcag |
52353423 |
T |
|
| Q |
344 |
aaacaggtcacagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgcttgatgatattcttgatgaatgt |
430 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| || ||||||||||||||||| || || || |||||||| |||||||||||| |
|
|
| T |
52353422 |
aaacaagtcacagaccgctctattaaagtatggcttcagcaactcaaagatgctgtttacgttctcgatgatatccttgatgaatgt |
52353336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 190 - 426
Target Start/End: Original strand, 20295073 - 20295309
Alignment:
| Q |
190 |
aaaaatggcagaggccttgctaggagttgtatttgagaatttgttatctcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaaggctgga |
289 |
Q |
| |
|
||||||||| || || ||||| |||||||| | ||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
20295073 |
aaaaatggccgacgctttgcttggagttgtgtctgaaaatttgacgtctctccttcaaaatgaatttgcaaccatttctggaatcaggtcaaaggctcga |
20295172 |
T |
|
| Q |
290 |
aagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactca |
389 |
Q |
| |
|
||| | ||| || ||| | || ||||||||||||||||||||||||||| ||||||| ||| ||| | |||||||||| |||| | ||| | |||| |
|
|
| T |
20295173 |
aagctatcagacaacttagttcacatcaaggctgttcttgaagatgctgagaagaaacaattcaaagaactctctattaagcaatggttacaagacctca |
20295272 |
T |
|
| Q |
390 |
aagatgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
|||||||||| |||||||| | |||||| |||||||| |
|
|
| T |
20295273 |
aagatgctgtttatgtgctcggtgatatccttgatga |
20295309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 246 - 430
Target Start/End: Complemental strand, 7100965 - 7100781
Alignment:
| Q |
246 |
aaaatgaatttgcaaccatttctggaatcacatcaaaggctggaaagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcagaa |
345 |
Q |
| |
|
|||| ||||||||||| | |||||||||| |||||||||| ||| | ||||||||||| || || || ||||||||||||||||| ||||| |||| |
|
|
| T |
7100965 |
aaaacgaatttgcaactctatctggaatcaagtcaaaggctgaaaaactatcaaccaccttagaacttattaaggctgttcttgaagacgctgaaaagaa |
7100866 |
T |
|
| Q |
346 |
acaggtcacagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgcttgatgatattcttgatgaatgt |
430 |
Q |
| |
|
|| | ||||||||||||||| | ||||||| || |||||||||||||| || ||||||||||||||||| |||||||||||| |
|
|
| T |
7100865 |
gcaattaacagaccgctctattcaaatatggctgcagcaactcaaagatgcggtgtatgtgcttgatgatatccttgatgaatgt |
7100781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 268 - 426
Target Start/End: Original strand, 7580297 - 7580455
Alignment:
| Q |
268 |
tggaatcacatcaaaggctggaaagttgtcaaccaccttggatctgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctatt |
367 |
Q |
| |
|
|||||||| ||||||||| |||| | |||| ||||| || |||||||||||||||||| |||| ||||| |||| || | || ||||| |||||| |
|
|
| T |
7580297 |
tggaatcaagtcaaaggctcaaaagctatcaagaaccttagaactgatcaaggctgttcttcaagacgctgaaaagaagcaattaactgaccgatctatt |
7580396 |
T |
|
| Q |
368 |
aaggtatggctccaacaactcaaagatgctgtatatgtgcttgatgatattcttgatga |
426 |
Q |
| |
|
| ||||| | || |||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
7580397 |
caaatatggttgcagcaactcaaagatgcggtgtatgtgcttgatgatatccttgatga |
7580455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 212 - 429
Target Start/End: Complemental strand, 26708910 - 26708693
Alignment:
| Q |
212 |
ggagttgtatttgagaatttgttatctcttgctcaaaatgaatttgcaaccatttctggaatcacatcaaaggctggaaagttgtcaaccaccttggatc |
311 |
Q |
| |
|
|||||||| || ||||||||| | ||||| ||||| ||||||| | ||||||| |||||||| |||||||||| ||| | ||||||||||| | | |
|
|
| T |
26708910 |
ggagttgtgttcgagaatttgatgtctctgcttcaaattgaattttctaccatttatggaatcaagtcaaaggctgaaaacctatcaaccaccttagttg |
26708811 |
T |
|
| Q |
312 |
tgatcaaggctgttcttgaagatgctgagcagaaacaggtcacagaccgctctattaaggtatggctccaacaactcaaagatgctgtatatgtgcttga |
411 |
Q |
| |
|
|| | ||| |||||||||||||||||| ||| ||| ||||||||| || ||||||||||||||| ||| | |||||||||| |||||||||||| || |
|
|
| T |
26708810 |
acattagggccgttcttgaagatgctgagaagagacaagtcacagacaactttattaaggtatggctacaagacctcaaagatgttgtatatgtgctcga |
26708711 |
T |
|
| Q |
412 |
tgatattcttgatgaatg |
429 |
Q |
| |
|
||| || ||||||||||| |
|
|
| T |
26708710 |
tgacatccttgatgaatg |
26708693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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