View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2729_low_32 (Length: 443)

Name: NF2729_low_32
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2729_low_32
NF2729_low_32
[»] chr1 (2 HSPs)
chr1 (1-424)||(7098551-7098974)
chr1 (1-386)||(7582272-7582657)
[»] chr4 (4 HSPs)
chr4 (7-292)||(13615872-13616155)
chr4 (2-74)||(20297145-20297217)
chr4 (125-240)||(20297268-20297383)
chr4 (31-79)||(52351438-52351486)
[»] chr5 (34 HSPs)
chr5 (8-396)||(17982082-17982470)
chr5 (1-79)||(30242925-30243003)
chr5 (1-78)||(30749116-30749193)
chr5 (2-80)||(17418711-17418789)
chr5 (1-79)||(29871658-29871736)
chr5 (2-68)||(30206008-30206074)
chr5 (1-79)||(30435294-30435372)
chr5 (1-79)||(30482876-30482954)
chr5 (124-245)||(30399383-30399504)
chr5 (1-80)||(30713975-30714054)
chr5 (115-240)||(30243027-30243152)
chr5 (1-78)||(30677721-30677798)
chr5 (115-240)||(30748966-30749091)
chr5 (326-386)||(29871360-29871420)
chr5 (106-237)||(30059683-30059814)
chr5 (1-80)||(30059840-30059919)
chr5 (1-79)||(30339078-30339156)
chr5 (1-79)||(30474853-30474931)
chr5 (131-177)||(30522302-30522348)
chr5 (131-177)||(30562642-30562688)
chr5 (100-238)||(30714074-30714212)
chr5 (115-232)||(17418824-17418941)
chr5 (5-78)||(30399550-30399623)
chr5 (326-386)||(4380832-4380892)
chr5 (326-390)||(30243241-30243305)
chr5 (124-175)||(30474760-30474811)
chr5 (115-240)||(30677823-30677948)
chr5 (10-78)||(29852784-29852852)
chr5 (326-386)||(30059531-30059591)
chr5 (346-382)||(30203329-30203365)
chr5 (326-386)||(30339394-30339454)
chr5 (326-386)||(30399239-30399299)
chr5 (326-398)||(30678037-30678109)
chr5 (326-390)||(30748813-30748877)
[»] chr7 (3 HSPs)
chr7 (2-78)||(26706817-26706893)
chr7 (134-245)||(26706650-26706761)
chr7 (326-386)||(26706506-26706566)


Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 7098974 - 7098551
Alignment:
Q  1 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaagggtggtgatacacctgtca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098974 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaagggtggtgatacacctgtca 7098875  T
Q  101 agactcctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098874 agactcctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttcc 7098775  T
Q  201 aagttggatcagaactcttagtaatttagttactcttgaagttggttcttgcaatcattgtgaacggttttcatcacttggtaaactaccatatctnnnn 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  7098774 aagttggatcagaactcttagtaatttagttactcttgaagttggttcttgcaatcattgtgaacggttttcatcacttggtaaactaccatatctaaaa 7098675  T
Q  301 nnnctcatattattcggtgtgtctgtgaaatacttggatgataaggaatttcacaatggtatggaggtaaggattttcccatctctagagacactcttgt 400  Q
       ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7098674 aaactcatattattcggtgtgtctgtgaaatacttggatgataatgaatttcacaatggtatggaggtaaggattttcccatctctagagacactcttgt 7098575  T
Q  401 tacgtgggatgccaaacttagagg 424  Q
    |||| |||||||||||||||||||    
T  7098574 tacgcgggatgccaaacttagagg 7098551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 7582272 - 7582657
Alignment:
Q  1 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaagggtggtgatacacctgtca 100  Q
    ||||| |||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||  |     |||| || |||| |    
T  7582272 aatgtcggtagtttatctgaagctcaagaagccaacttgatgggtaaaaaagacctcgatgaattatgcttgtcatggttgcacaatgattcatctgtta 7582371  T
Q  101 agactcctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttcc 200  Q
    ||||  || |||| ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |||| |||||||| ||    
T  7582372 agaccactattattagtgacgatcaagtacttgaagtgcttcaacctcacacaaatctcaagagcttgaaaatagatttttacaaaggtttatgcttccc 7582471  T
Q  201 aagttggatcagaactcttagtaatttagttactcttgaagttggttcttgcaatcattgtgaacggttttcatcacttggtaaactaccatatctnnnn 300  Q
    ||||||||||||||||||| |||||||||||||||||||| ||     |||||  || |||||||||||||||||||||||||||||||||| |||        
T  7582472 aagttggatcagaactcttggtaatttagttactcttgaaattaagggttgcatgcactgtgaacggttttcatcacttggtaaactaccatctctaaaa 7582571  T
Q  301 nnnctcatattattcggtgtgtctgtgaaatacttggatgataaggaatttcacaatggtatggaggtaaggattttcccatctct 386  Q
       ||   | ||  |   |||||||||||||||||||||||| | ||||||||||||||| |||| || || ||||||||||||||    
T  7582572 acacttcaaataaccttggtgtctgtgaaatacttggatgatgatgaatttcacaatggtttggaagtgagaattttcccatctct 7582657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 138; Significance: 6e-72; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 13616155 - 13615872
Alignment:
Q  7 ggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaagggtggtgatacacctgtcaagactc 106  Q
    |||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||      ||| || |||||||||| |    
T  13616155 ggtagtttatttgaagctcaagaagccaatttaatggataaaaaagacctcgatgaattattcttgtcatggcagcacaaagattcatctgtcaagaccc 13616056  T
Q  107 ctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttg 206  Q
    || |||| ||||||||||||||| ||||||||||||| |||| | ||||||||||||||||||||||| |||||||| |||||||||||||  |||||||    
T  13616055 ctattattagtgatgatcaagtacttgaagtgcttca-cctc-tccaaatctcaagagcttgaaaatatattcttacaaaggattatgcttctcaagttg 13615958  T
Q  207 gatcagaactcttagtaatttagttactcttgaagttggttcttgcaatcattgtgaacggttttcatcacttggtaaactaccat 292  Q
    ||||||||||| ||||||||||||||||||| |||||     ||||   ||||| |||||||||||||||||||||||||||||||    
T  13615957 gatcagaactcatagtaatttagttactcttaaagttaaggattgcgtgcattgagaacggttttcatcacttggtaaactaccat 13615872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 20297145 - 20297217
Alignment:
Q  2 atgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtc 74  Q
    ||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||  ||||||||||||||||    
T  20297145 atgttggcagtatatctgaagctcaagaagccaatttgatgggtaaaaaagaccttcatgaattatgcttgtc 20297217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 20297268 - 20297383
Alignment:
Q  125 aagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaactcttagtaa 224  Q
    ||||| | |||||||||||||||||  ||||||||||| ||||| ||||| |||  ||  | ||||| || || ||||||||||| |  | |||||||||    
T  20297268 aagtactcgaagtgcttcaacctcagtcaaatctcaagtgcttggaaataaattgctatgatggattgtggttaccaagttggataattattcttagtaa 20297367  T
Q  225 tttagttactcttgaa 240  Q
    ||||||| || |||||    
T  20297368 tttagtttcttttgaa 20297383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 52351486 - 52351438
Alignment:
Q  31 gccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgga 79  Q
    |||||||| ||||||||||||||||||   ||||||||| |||||||||    
T  52351486 gccaatttgatgggtaaaaaagacctccgagaattatgcctgtcatgga 52351438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 7e-59; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 8 - 396
Target Start/End: Complemental strand, 17982470 - 17982082
Alignment:
Q  8 gtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaagggtggtgatacacctgtcaagactcc 107  Q
    ||||||||||||||| | ||||||| ||||| || ||||||||||||||| ||||||||||| ||||||||  |      | | || |||||||||| ||    
T  17982470 gtagtttatctgaagttgaagaagcaaattttataggtaaaaaagacctcaatgaattatgcctgtcatggcggcaccaaggttcatctgtcaagacccc 17982371  T
Q  108 tgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttgg 207  Q
    | |||| ||||||||||  ||| ||||||||||||||||||| | |||||| ||| ||||||||||| ||| |||||||||||||||||| |||||||||    
T  17982370 tattattagtgatgatcgtgtatttgaagtgcttcaacctcacagaaatcttaagggcttgaaaatatattattaccaaggattatgcttcccaagttgg 17982271  T
Q  208 atcagaactcttagtaatttagttactcttgaagttggttcttgcaatcattgtgaacggttttcatcacttggtaaactaccatatctnnnnnnnctca 307  Q
    |||||||||||||| |||||| ||||||||   |||     |||||  | ||||||||||||||||||||||||||||||||||| |||       ||      
T  17982270 atcagaactcttagcaatttacttactcttattgttaaggattgcatgctttgtgaacggttttcatcacttggtaaactaccatctctaaaaaaacttg 17982171  T
Q  308 tattattcggtgtgtctgtgaaatacttggatgataaggaatttcacaatggtatggaggtaaggattttcccatctctagagacactc 396  Q
     | |||||  ||||||||||||||||||||||||| | |||||| | |||||| ||||| | |  | |||||||||||| |||| ||||    
T  17982170 aactattcaatgtgtctgtgaaatacttggatgatgatgaatttgaaaatggtgtggagatgataaatttcccatctctggagatactc 17982082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 30242925 - 30243003
Alignment:
Q  1 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgga 79  Q
    |||||||| ||||||||||||||| |||  || ||||| |||||||||||||||||  |||||||||||||||||||||    
T  30242925 aatgttggcagtttatctgaagctgaagcggctaatttgatgggtaaaaaagaccttcatgaattatgcttgtcatgga 30243003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 30749193 - 30749116
Alignment:
Q  1 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgg 78  Q
    |||||||| ||||||||||||||| |||  || ||||| |||||||||||||||||  ||||||||||||||||||||    
T  30749193 aatgttggcagtttatctgaagctgaagcggctaatttgatgggtaaaaaagaccttcatgaattatgcttgtcatgg 30749116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 17418711 - 17418789
Alignment:
Q  2 atgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaa 80  Q
    ||||||||| ||||||||||||| ||||||| || || || ||||||||||||||| | |||||||||||||| |||||    
T  17418711 atgttggtaatttatctgaagctcaagaagctaagttgataggtaaaaaagacctccaagaattatgcttgtcgtggaa 17418789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 29871736 - 29871658
Alignment:
Q  1 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgga 79  Q
    |||||||| ||||||||||||||| |||  || ||||| |||||||||||||||||  || ||||||||||||||||||    
T  29871736 aatgttggcagtttatctgaagctgaagcggctaatttgatgggtaaaaaagaccttcatcaattatgcttgtcatgga 29871658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 30206074 - 30206008
Alignment:
Q  2 atgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatg 68  Q
    ||||| ||||||||||||||||| ||| ||||||||| |||||||||||||||||| | ||||||||    
T  30206074 atgtttgtagtttatctgaagctcaagcagccaatttgatgggtaaaaaagacctccaggaattatg 30206008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 30435372 - 30435294
Alignment:
Q  1 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgga 79  Q
    |||||||||||||||||||||||| |||  || ||||| | |||||||||||||||  |||||||||||||||| ||||    
T  30435372 aatgttggtagtttatctgaagctgaagcggctaatttgaagggtaaaaaagaccttcatgaattatgcttgtcgtgga 30435294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 30482954 - 30482876
Alignment:
Q  1 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgga 79  Q
    |||||||| || |||||||||||| |||  || ||||| |||||||||||||||||  |||||||||||||||||||||    
T  30482954 aatgttggcaggttatctgaagctgaagcggctaatttgatgggtaaaaaagaccttcatgaattatgcttgtcatgga 30482876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 30399504 - 30399383
Alignment:
Q  124 caagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaactcttagta 223  Q
    |||||| | |||||||||||||||||  ||||||||||| ||||||||||| |||  ||  | |||||||  || ||||||||||| |  | ||||||||    
T  30399504 caagtactcgaagtgcttcaacctcactcaaatctcaagtgcttgaaaataaattactatgacggattatcattaccaagttggataattattcttagta 30399405  T
Q  224 atttagttactcttgaagttgg 245  Q
    |||||||| |||||||| ||||    
T  30399404 atttagtttctcttgaacttgg 30399383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 30713975 - 30714054
Alignment:
Q  1 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaa 80  Q
    |||||||| ||||||| ||||||| |||  || ||||| |||||||||||||||||  ||||||||| ||||||||||||    
T  30713975 aatgttggcagtttatttgaagctgaagcggctaatttgatgggtaaaaaagaccttcatgaattatacttgtcatggaa 30714054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 30243027 - 30243152
Alignment:
Q  115 agtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaa 214  Q
    |||| ||| |||||| |||||||||||||||||||  ||||||||||| |||||||||||  ||  ||  | ||||||| ||| ||||||||||| |       
T  30243027 agtgctgagcaagtacttgaagtgcttcaacctcactcaaatctcaagtgcttgaaaataagtttctatgagggattatccttaccaagttggataattc 30243126  T
Q  215 ctcttagtaatttagttactcttgaa 240  Q
     ||||||||||||| || ||||||||    
T  30243127 ttcttagtaatttaatttctcttgaa 30243152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 30677721 - 30677798
Alignment:
Q  1 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgg 78  Q
    ||||||| |||||||||||||||| |||  || || || |||| ||||||||||||  ||||||||||||||||||||    
T  30677721 aatgttgctagtttatctgaagctgaagcggctaaattgatggataaaaaagaccttcatgaattatgcttgtcatgg 30677798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 115 - 240
Target Start/End: Complemental strand, 30749091 - 30748966
Alignment:
Q  115 agtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaa 214  Q
    |||| ||| |||||| |||||||||||||||||||  ||||||||||  |||||| |||| |||  ||  |||||||||  || ||||||||||| |  |    
T  30749091 agtgctgagcaagtacttgaagtgcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcgttaccaagttggataatta 30748992  T
Q  215 ctcttagtaatttagttactcttgaa 240  Q
     ||||||||||||| || ||||||||    
T  30748991 ttcttagtaatttaatttctcttgaa 30748966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 29871420 - 29871360
Alignment:
Q  326 tgaaatacttggatgataaggaatttcacaatggtatggaggtaaggattttcccatctct 386  Q
    ||||||||||||||||| | |||| |||  ||||||||||||| |||||||||||||||||    
T  29871420 tgaaatacttggatgatgatgaatctcaggatggtatggaggtgaggattttcccatctct 29871360  T

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Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 30059814 - 30059683
Alignment:
Q  106 cctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagtt 205  Q
    |||||| | |||| ||| |||||| ||||||| |||||||||||  ||||||||||  |||||||||||  ||  ||  | ||||||| ||| |||||||    
T  30059814 cctgttgttagtgttgagcaagtacttgaagttcttcaacctcactcaaatctcaactgcttgaaaataagtttctatgagggattatccttgccaagtt 30059715  T
Q  206 ggatcagaactcttagtaatttagttactctt 237  Q
    |||| |  | |||||||||||||||| |||||    
T  30059714 ggataattattcttagtaatttagtttctctt 30059683  T

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Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 30059919 - 30059840
Alignment:
Q  1 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatggaa 80  Q
    |||||||| || |||| ||||||| |||  || ||||| |||||||||||||||||  ||||||||| ||||||||||||    
T  30059919 aatgttggcaggttatttgaagctgaagcggctaatttgatgggtaaaaaagaccttcatgaattatacttgtcatggaa 30059840  T

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Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 30339078 - 30339156
Alignment:
Q  1 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgga 79  Q
    |||||||| || |||||||||||| |||  || ||||| |||||||||||||||||  || ||||||||||||| ||||    
T  30339078 aatgttggcaggttatctgaagctgaagcggctaatttgatgggtaaaaaagaccttcatcaattatgcttgtcgtgga 30339156  T

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Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 30474931 - 30474853
Alignment:
Q  1 aatgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgga 79  Q
    ||||||||||| |||| |||||||  | | |||||||| ||||||||||| |||||| | ||||||| |||||||||||    
T  30474931 aatgttggtagcttatttgaagctcgacatgccaatttgatgggtaaaaaggacctccaagaattatccttgtcatgga 30474853  T

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Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 30522302 - 30522348
Alignment:
Q  131 ttgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacat 177  Q
    |||||||||||||||||||  |||||||||||| |||||||||||||    
T  30522302 ttgaagtgcttcaacctcactcaaatctcaagatcttgaaaatacat 30522348  T

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Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 30562642 - 30562688
Alignment:
Q  131 ttgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacat 177  Q
    |||||||||||||||||||  |||||||||||| |||||||||||||    
T  30562642 ttgaagtgcttcaacctcactcaaatctcaagatcttgaaaatacat 30562688  T

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Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 30714074 - 30714212
Alignment:
Q  100 aagactcctgttatcagtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttc 199  Q
    ||||| |||||| | |||| ||| |||||| | |||| ||||||||||||  ||||||||||  |||||| |||| |||  ||  |||||||||  || |    
T  30714074 aagacccctgttgttagtgctgagcaagtactcgaagagcttcaacctcactcaaatctcaaatgcttgacaataaattactatgaaggattatcattac 30714173  T
Q  200 caagttggatcagaactcttagtaatttagttactcttg 238  Q
    |||||||||| |  | |||||||||||||||| ||||||    
T  30714174 caagttggataattattcttagtaatttagtttctcttg 30714212  T

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Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 232
Target Start/End: Original strand, 17418824 - 17418941
Alignment:
Q  115 agtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaa 214  Q
    |||| ||| ||| || |||||||||||||||||||  ||||||||||| |||||||||||  ||  ||  | ||| |||  || ||||||||||| || |    
T  17418824 agtgctgagcaactacttgaagtgcttcaacctcactcaaatctcaagtgcttgaaaataacttactatgatggaatattgttaccaagttggataagta 17418923  T
Q  215 ctcttagtaatttagtta 232  Q
     |||||||||||||||||    
T  17418924 ttcttagtaatttagtta 17418941  T

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Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 30399623 - 30399550
Alignment:
Q  5 ttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgg 78  Q
    |||| ||||||||| ||||| |||  ||  |||| |||||||||||||||||  ||||||||||||||||||||    
T  30399623 ttggcagtttatctcaagctcaagcggctgatttgatgggtaaaaaagaccttcatgaattatgcttgtcatgg 30399550  T

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Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 4380892 - 4380832
Alignment:
Q  326 tgaaatacttggatgataaggaatttcacaatggtatggaggtaaggattttcccatctct 386  Q
    ||||||||||||||||| | |||||| |  ||||||||||||| ||| |||||||||||||    
T  4380892 tgaaatacttggatgatgatgaatttgaggatggtatggaggtgagggttttcccatctct 4380832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 390
Target Start/End: Original strand, 30243241 - 30243305
Alignment:
Q  326 tgaaatacttggatgataaggaatttcacaatggtatggaggtaaggattttcccatctctagag 390  Q
    ||||||||||||||||| | |||| | |  ||||||||||||| ||| |||||||||||||||||    
T  30243241 tgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctagag 30243305  T

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Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 30474811 - 30474760
Alignment:
Q  124 caagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatac 175  Q
    |||||| ||||| |||||||||||||  ||||||||||||| ||||||||||    
T  30474811 caagtacttgaaatgcttcaacctcactcaaatctcaagaggttgaaaatac 30474760  T

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Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 30677823 - 30677948
Alignment:
Q  115 agtgatgatcaagtaattgaagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaa 214  Q
    |||| ||| |||||| ||||||||||| |||||||  ||||||||||  |||||| |||| |||  ||  || ||||||  || ||||||||||| |  |    
T  30677823 agtgctgagcaagtacttgaagtgcttaaacctcactcaaatctcaaatgcttgacaataaattactatgaaagattatcgttaccaagttggataatta 30677922  T
Q  215 ctcttagtaatttagttactcttgaa 240  Q
     ||||||||||||| || ||||||||    
T  30677923 ttcttagtaatttaatttctcttgaa 30677948  T

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Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 29852852 - 29852784
Alignment:
Q  10 agtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgg 78  Q
    ||||||||||||||| |||  || ||||| |||||||||| |||| |  |||||||||| |||||||||    
T  29852852 agtttatctgaagctgaagcggctaatttgatgggtaaaacagacattcatgaattatgtttgtcatgg 29852784  T

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Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 30059591 - 30059531
Alignment:
Q  326 tgaaatacttggatgataaggaatttcacaatggtatggaggtaaggattttcccatctct 386  Q
    ||||||||||||||||| | |||| | |  ||||||||||||| ||| |||||||||||||    
T  30059591 tgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctct 30059531  T

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Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 382
Target Start/End: Complemental strand, 30203365 - 30203329
Alignment:
Q  346 gaatttcacaatggtatggaggtaaggattttcccat 382  Q
    |||| |||||||||||||||||| |||||||||||||    
T  30203365 gaatctcacaatggtatggaggtgaggattttcccat 30203329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 386
Target Start/End: Original strand, 30339394 - 30339454
Alignment:
Q  326 tgaaatacttggatgataaggaatttcacaatggtatggaggtaaggattttcccatctct 386  Q
    ||||||||||||||||| | |||| | |  ||||||||||||| ||| |||||||||||||    
T  30339394 tgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctct 30339454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 30399299 - 30399239
Alignment:
Q  326 tgaaatacttggatgataaggaatttcacaatggtatggaggtaaggattttcccatctct 386  Q
    ||||||||||||||||| | |||| |||  ||||| ||||||| ||| |||||||||||||    
T  30399299 tgaaatacttggatgatgatgaatctcaggatggtgtggaggtgagggttttcccatctct 30399239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 30678037 - 30678109
Alignment:
Q  326 tgaaatacttggatgataaggaatttcacaatggtatggaggtaaggattttcccatctctagagacactctt 398  Q
    ||||||||||||||||| | |||| | |  |||||||| |||| ||| ||||||||||||| |||| ||||||    
T  30678037 tgaaatacttggatgatgatgaatctgaggatggtatgaaggtgagggttttcccatctctggagaaactctt 30678109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 30748877 - 30748813
Alignment:
Q  326 tgaaatacttggatgataaggaatttcacaatggtatggaggtaaggattttcccatctctagag 390  Q
    ||||||||||||||||| | |||| | |  ||||||||||||| ||  |||||||||||||||||    
T  30748877 tgaaatacttggatgatgatgaatctgagtatggtatggaggtgagcgttttcccatctctagag 30748813  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 26706893 - 26706817
Alignment:
Q  2 atgttggtagtttatctgaagctaaagaagccaatttaatgggtaaaaaagacctcgatgaattatgcttgtcatgg 78  Q
    ||||||| ||||||||||||||| ||||||||||||| ||||| |||||| |||||||  |||||||||||||||||    
T  26706893 atgttggcagtttatctgaagctcaagaagccaatttgatggggaaaaaaaacctcgaaaaattatgcttgtcatgg 26706817  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 245
Target Start/End: Complemental strand, 26706761 - 26706650
Alignment:
Q  134 aagtgcttcaacctcatacaaatctcaagagcttgaaaatacattcttaccaaggattatgctttccaagttggatcagaactcttagtaatttagttac 233  Q
    ||||||||||||||||  ||||||||||| ||||| ||||| | |  ||| | |||||||  || ||||||||| | || | |||||||||||||||| |    
T  26706761 aagtgcttcaacctcactcaaatctcaagtgcttggaaataaagtactacgacggattatcattaccaagttgggtaagtattcttagtaatttagtttc 26706662  T
Q  234 tcttgaagttgg 245  Q
    ||||||| ||||    
T  26706661 tcttgaacttgg 26706650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 26706566 - 26706506
Alignment:
Q  326 tgaaatacttggatgataaggaatttcacaatggtatggaggtaaggattttcccatctct 386  Q
    ||||||||||||||||| | |||| |||  |||| |||||||| ||| |||||||||||||    
T  26706566 tgaaatacttggatgatgatgaatctcaggatggcatggaggtgagggttttcccatctct 26706506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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