View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2729_low_33 (Length: 440)

Name: NF2729_low_33
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2729_low_33
NF2729_low_33
[»] chr1 (2 HSPs)
chr1 (3-424)||(35306381-35306794)
chr1 (383-423)||(30190811-30190851)
[»] chr3 (1 HSPs)
chr3 (32-424)||(35231461-35231850)
[»] chr5 (2 HSPs)
chr5 (64-421)||(16597360-16597710)
chr5 (383-423)||(13191724-13191764)
[»] chr2 (2 HSPs)
chr2 (385-427)||(30600656-30600698)
chr2 (383-423)||(20717593-20717633)
[»] scaffold0039 (1 HSPs)
scaffold0039 (379-422)||(57012-57055)
[»] chr4 (3 HSPs)
chr4 (379-422)||(41223651-41223694)
chr4 (380-423)||(48084777-48084820)
chr4 (379-423)||(41809882-41809926)
[»] chr6 (3 HSPs)
chr6 (379-421)||(10871321-10871363)
chr6 (379-423)||(19694550-19694594)
chr6 (383-423)||(33091231-33091271)
[»] scaffold0097 (1 HSPs)
scaffold0097 (383-423)||(21430-21470)
[»] chr8 (3 HSPs)
chr8 (383-423)||(22531293-22531333)
chr8 (383-423)||(22535978-22536018)
chr8 (383-423)||(25993899-25993939)


Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 3 - 424
Target Start/End: Original strand, 35306381 - 35306794
Alignment:
Q  3 aagcaaaggaaagccttgtaannnnnnnnatccctttaacaattttaatatagtatttaataaactagatcattgtatttgttagtatgagattatttca 102  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35306381 aagcaaaggaaagccttgtaattttttttatccctttaacaattttaatatagtatttaataaactagatcattgtatttgttagtatgagattctttca 35306480  T
Q  103 gtaatccactgatctaatgctgggaaaggggaaaaacattcatttgtcccaattcatataattgataatgctcaaaggttcatgaacnnnnnnntcgaat 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  35306481 gtaatccactgatctaatgctgggaaaggggaaaaacattcatttgtcccaattcatataattgataatgctcaaaggttcatgaactaaaaaatcgaat 35306580  T
Q  203 ttaataaaattggttgaaatgatgatataatcaaagagattgtaagacaacaaacataaaaaactgaaaaagaagaaatacgagcacagcataaataaca 302  Q
    ||||||||||||||||||   ||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    ||||||    
T  35306581 ttaataaaattggttgaa---atggtataatcaatgagattgtaagacaacaaacat-aaaaactgaaaaagaagaaatacgagcacagc----ataaca 35306672  T
Q  303 ctaagcagaagcagaataatcagtacagtgatgaagtaataaaatagggataaaagagtaataatagaattaagtggttccattccattgcttacctccc 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35306673 ctaagcagaagcagaataatcagtacagtgatgaagtaataaaatagggataaaagagtaataatagaattaagtggttccattccattgcatacctccc 35306772  T
Q  403 aaattggggggaatgaaaaata 424  Q
    ||||||||||||||||||||||    
T  35306773 aaattggggggaatgaaaaata 35306794  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 30190811 - 30190851
Alignment:
Q  383 cattccattgcttacctcccaaattggggggaatgaaaaat 423  Q
    ||||||||||  |||||||||||||||||||||||| ||||    
T  30190811 cattccattggatacctcccaaattggggggaatgagaaat 30190851  T

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Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 32 - 424
Target Start/End: Original strand, 35231461 - 35231850
Alignment:
Q  32 atccctttaacaattttaatatagtatttaataaactagatcattgtatttgttagtatgagattatttcagtaatccactgatctaatgctgggaaagg 131  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35231461 atccctttaacaattttaatatcgtatttaataaactagatcattgtatttgttagtatgagattgtttcagtaatccactgatctaatgctgggaaagg 35231560  T
Q  132 ggaaaaacattcatttgtcccaattcatataattgataatgctcaaaggttcatgaacnnnnnnntcgaatttaataaaattggttgaaatgatgatata 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||   ||| ||||    
T  35231561 ggaaaaacattcatttgtcccaattcatataattgataatgctcaaaggttcatgaacaaaaaaatcgaatttaataaaattggttgaa---atggtata 35231657  T
Q  232 atcaaagagattgtaagacaacaaacataaaaaactgaaaaagaagaaatacgagcacagcataaataacactaagcagaagcag-----aataatcagt 326  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    ||||||||||||||||||||     ||||||||||    
T  35231658 atcaatgagattgtaagacaacaaacat-aaaaactgaaaaagaagaaatacgagcacagc----ataacactaagcagaagcagatctcaataatcagt 35231752  T
Q  327 acagtgatgaagtaataaaatagggataaaagagtaataatagaattaagtggttccattccattgcttacctcccaaattggggggaatgaaaaata 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  35231753 acagtgatgaagtaataaaatagggataaaagagtaataatagaattaagtggttctattccattgcatacctcccaaattggggggaatgaaaaata 35231850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 64 - 421
Target Start/End: Original strand, 16597360 - 16597710
Alignment:
Q  64 aaactagatcattgtatttgttagtatgagattatttcagtaatccactgatctaatgctgggaaaggggaaaaacattcatttgtcccaattcatataa 163  Q
    |||||||||||||||| ||||||| ||||||||  ||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16597360 aaactagatcattgtagttgttagcatgagattgattcagtaatccatcgatctaatgctgggaaaggggaaaaacattcatttgtctcaattcatataa 16597459  T
Q  164 ttgataatgctcaaaggttca-tgaacnnnnnnntcgaatttaataaaattggttgaaatgatgatataatcaaagagattgtaagacaacaaacataaa 262  Q
    |||||||| |||||||||| | ||||        |||||||||| |||||||||| |||||||   | |||||| ||||||| |||||||||||||| ||    
T  16597460 ttgataatactcaaaggtttaatgaa-aaaaaattcgaatttaacaaaattggtttaaatgat---acaatcaacgagattgcaagacaacaaacat-aa 16597554  T
Q  263 aaactgaaaaagaagaaatacgagcacagcataaataacacta-agcagaagcagaataatcagtacagtgatgaagtaataaaatagggataaaagagt 361  Q
    |||||||| ||||||||||| | |||||||     |||||||| ||| ||||||| | ||||||||||||||||||||||||||| | ||||||||||||    
T  16597555 aaactgaacaagaagaaatatgtgcacagc----gtaacactagagcggaagcaggagaatcagtacagtgatgaagtaataaaaaaaggataaaagagt 16597650  T
Q  362 aataatagaattaagtggttccattccattgcttacctcccaaattggggggaatgaaaa 421  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  16597651 aataatagaattaagtggttccattccattgcatacctcctaaattggggggaatgaaaa 16597710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 13191724 - 13191764
Alignment:
Q  383 cattccattgcttacctcccaaattggggggaatgaaaaat 423  Q
    ||||||||||  |||||||||||||||||||||||| ||||    
T  13191724 cattccattggatacctcccaaattggggggaatgagaaat 13191764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 30600656 - 30600698
Alignment:
Q  385 ttccattgcttacctcccaaattggggggaatgaaaaatatga 427  Q
    |||||||||||||||||||| ||||| ||||||||||||||||    
T  30600656 ttccattgcttacctcccaatttgggaggaatgaaaaatatga 30600698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 20717593 - 20717633
Alignment:
Q  383 cattccattgcttacctcccaaattggggggaatgaaaaat 423  Q
    ||||||||||  |||||||||||||||||||||||| ||||    
T  20717593 cattccattggatacctcccaaattggggggaatgagaaat 20717633  T

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Target: scaffold0039 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 422
Target Start/End: Complemental strand, 57055 - 57012
Alignment:
Q  379 gttccattccattgcttacctcccaaattggggggaatgaaaaa 422  Q
    ||||||||||||||  |||||||||| |||||||||||||||||    
T  57055 gttccattccattggatacctcccaatttggggggaatgaaaaa 57012  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 422
Target Start/End: Original strand, 41223651 - 41223694
Alignment:
Q  379 gttccattccattgcttacctcccaaattggggggaatgaaaaa 422  Q
    ||||||||||||||  |||||||||| |||||||||||||||||    
T  41223651 gttccattccattggatacctcccaatttggggggaatgaaaaa 41223694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 423
Target Start/End: Complemental strand, 48084820 - 48084777
Alignment:
Q  380 ttccattccattgcttacctcccaaattggggggaatgaaaaat 423  Q
    ||||||||||| |  |||||||||||||||||||||||||||||    
T  48084820 ttccattccatcgtatacctcccaaattggggggaatgaaaaat 48084777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 41809882 - 41809926
Alignment:
Q  379 gttccattccattgcttacctcccaaattggggggaatgaaaaat 423  Q
    ||||||||||||||  ||| ||||||||||||||||||| |||||    
T  41809882 gttccattccattgaatacatcccaaattggggggaatggaaaat 41809926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 421
Target Start/End: Complemental strand, 10871363 - 10871321
Alignment:
Q  379 gttccattccattgcttacctcccaaattggggggaatgaaaa 421  Q
    ||||||||||||||| ||| |||||||||| ||||||||||||    
T  10871363 gttccattccattgcatacatcccaaattgaggggaatgaaaa 10871321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 19694550 - 19694594
Alignment:
Q  379 gttccattccattgcttacctcccaaattggggggaatgaaaaat 423  Q
    ||||||||||||||| | |  ||||||||||||||||||||||||    
T  19694550 gttccattccattgcatgcaccccaaattggggggaatgaaaaat 19694594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 33091271 - 33091231
Alignment:
Q  383 cattccattgcttacctcccaaattggggggaatgaaaaat 423  Q
    ||||||||||  |||||||||||||||||||||||| ||||    
T  33091271 cattccattggatacctcccaaattggggggaatgagaaat 33091231  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 21430 - 21470
Alignment:
Q  383 cattccattgcttacctcccaaattggggggaatgaaaaat 423  Q
    ||||||||||  |||||||||||||||||||||||| ||||    
T  21430 cattccattggatacctcccaaattggggggaatgagaaat 21470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 22531293 - 22531333
Alignment:
Q  383 cattccattgcttacctcccaaattggggggaatgaaaaat 423  Q
    ||||||||||  |||||||||||||||||||||||| ||||    
T  22531293 cattccattggatacctcccaaattggggggaatgagaaat 22531333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 22535978 - 22536018
Alignment:
Q  383 cattccattgcttacctcccaaattggggggaatgaaaaat 423  Q
    ||||||||||  |||||||||||||||||||||||| ||||    
T  22535978 cattccattggatacctcccaaattggggggaatgagaaat 22536018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 25993899 - 25993939
Alignment:
Q  383 cattccattgcttacctcccaaattggggggaatgaaaaat 423  Q
    ||||||||||  |||||||||||||||||||||||| ||||    
T  25993899 cattccattggatacctcccaaattggggggaatgagaaat 25993939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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