View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_37 (Length: 423)
Name: NF2729_low_37
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 43357696 - 43357288
Alignment:
| Q |
1 |
gcaacttccacaacaagttgaacaaatggtaaatcccatgttgccacaaccaatacaaagacaattactagaaacagttggtgttccttccaaaatcttt |
100 |
Q |
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| T |
43357696 |
gcaacttccacaacaagttgaacaaatggtaaatcccatgttgccacaaccaatacaaagacaatcactagaaacagttggtgttccttccaaaatcttt |
43357597 |
T |
|
| Q |
101 |
ccaagccaacccatttcatgcaaaccaaacacttcatcagctcctccaatgtatcttcctttgataaaaagctttggaggaatcactttctctcccaata |
200 |
Q |
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| T |
43357596 |
ccaagccaacccatttcatgcaaaccaaacacttcatcagctcctccaatgtatcttcctctgataaaaagctttggaggaatcactttctctcccaata |
43357497 |
T |
|
| Q |
201 |
tattccacaactcttgtctgtattccaagtccagagacacatctctttcatgatacattactcttaaacttctcaacaagaaatggattgtgttgcaatc |
300 |
Q |
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| T |
43357496 |
tattccacaactcttgtctgtattccaagtccagagacacatctctttcatgatacattactcttaaacttctcaacaagaaatggattgtgttgcaatc |
43357397 |
T |
|
| Q |
301 |
ttgaaatgttttccttattcctctcaaacttgttgtgtaaagaatgattgaattgcttcctcctggtggacacttttcttcaaaatctttaagtgatgga |
400 |
Q |
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| T |
43357396 |
ttgaaatgttttccttattcctctcaaacttgttgtgtaaagaatgattgaattgcttcctcctggtggacacttttcttcaaaatctttaagtgatgga |
43357297 |
T |
|
| Q |
401 |
taccctttg |
409 |
Q |
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| T |
43357296 |
taccctttg |
43357288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 189
Target Start/End: Complemental strand, 24571207 - 24571097
Alignment:
| Q |
79 |
tggtgttccttccaaaatctttccaagccaacccatttcatgcaaaccaaacacttcatcagctcctccaatgtatcttcctttgataaaaagctttgga |
178 |
Q |
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|||| |||| ||||||| || |||||| ||| |||| |||||||| | | ||||||||| ||||||||||||| ||| || | || ||||||||| || |
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| T |
24571207 |
tggtattccatccaaaagctatccaagacaatccatctcatgcaatcttataacttcatcaactcctccaatgtacctttctattatgaaaagctttaga |
24571108 |
T |
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| Q |
179 |
ggaatcacttt |
189 |
Q |
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| T |
24571107 |
ggaatcacttt |
24571097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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