View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_39 (Length: 414)
Name: NF2729_low_39
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 4 - 401
Target Start/End: Original strand, 12366962 - 12367352
Alignment:
| Q |
4 |
tcctagtttcctatattgttcaaatttaattccttgcgggaagaaaattcccaccctcttcagtcaggcattaaaagtgctttaggcaaacattttaatt |
103 |
Q |
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| T |
12366962 |
tcctagtttcctatattgttcaaatttaattccttgtgggaagaaaatccccaccctcttcagtcaggcattaaaagtgctttaggcaaacattttaatc |
12367061 |
T |
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| Q |
104 |
aaagagttggggtctgaaattccaagggttaatctaacctattgaatccccaatggaacgaaacgaggtaagcctaaattgcttatatattgattgatat |
203 |
Q |
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| T |
12367062 |
aaagagttggggcctgaaattccaagggttaatctaacctattgaatccccaatggaacgaaaggaggtaagcctaaattgcttatatattgattgtt-- |
12367159 |
T |
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| Q |
204 |
ttggaaggtggtgtgaatcataatggatatgaccaagctagggatcatgaatgaaaaacaaaattataatcttttttaaattaccgaataataaagttaa |
303 |
Q |
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| T |
12367160 |
-----aggtggtatgaatcataatggatatgaccaagctagggatcatgaatgaaaaacaaaattataatcttttttacattaccgaataataaagttaa |
12367254 |
T |
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| Q |
304 |
atatttagattttaatcatgagattgaagccctcattctcattatatattttctgcaacttaatatatacatgaaatttcatgctatctctaatcttc |
401 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12367255 |
atatctagattttaatcatgagattgaagccctcattctcattttatatttgctgcaacttaatatatacatgaaatttcatgctatctctaatcttc |
12367352 |
T |
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