View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2729_low_43 (Length: 400)
Name: NF2729_low_43
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_43 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 15 - 400
Target Start/End: Complemental strand, 41982009 - 41981624
Alignment:
| Q |
15 |
ggccatttaaaatcgaaactttataatataatttcatttattcattcacttgctaccaatattaactaactatttattggttaattaggcaaaattgttg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41982009 |
ggccatttaaaatcgaaactttataatataatttcatttattcattcacttgctaccaatattaactaactatttattggttaattaggcaaaattgttg |
41981910 |
T |
|
| Q |
115 |
tttcaaagtagtgaaactgaaagatgaagaagaaagagttttcttgtttagtagaaaaagaaaatgtttgtttgacttgactcaaaaaagaatcattgag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41981909 |
tttcaaagtagtgaaactgaaagatgaagaagaaagagttttcttgtttagtagaaaaagaaaatgtttgtttgacttgactcaaaaaagaatcattaag |
41981810 |
T |
|
| Q |
215 |
caaaaattcaacataattctcccgctaatctcgcctcttcatacaatacacagacatttccctcctttatgtcccaaaccgctctcattctcactttttt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41981809 |
caaaaattcaacataattctcccgctaatctcgcctcttcatacaatacacagacatttccctcctttatgtcccaaaccgctctcattctcactttttt |
41981710 |
T |
|
| Q |
315 |
cttcaactaacacacaacactacacaatgattcaactaccccatttcttcttctccttcttaatcatcatcaccaccaccaccacc |
400 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41981709 |
cttcaactaacacacaacagtacacaatgattcaactaccccatttcttcttctccttcttgatcatcatcaccaccaccaccacc |
41981624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 366
Target Start/End: Complemental strand, 46317439 - 46317406
Alignment:
| Q |
333 |
actacacaatgattcaactaccccatttcttctt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
46317439 |
actacacaatgattcaactaccccatttcttctt |
46317406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 366
Target Start/End: Original strand, 6840510 - 6840544
Alignment:
| Q |
332 |
cactacacaatgattcaactaccccatttcttctt |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
6840510 |
cactacacaatgattcaactaccccatttcttctt |
6840544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University