View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_44 (Length: 395)
Name: NF2729_low_44
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 44 - 340
Target Start/End: Complemental strand, 35075484 - 35075191
Alignment:
| Q |
44 |
attacaaaagggttaaaagtccaaatt-gtatcatccaaccataaattccaaccgacagtcttaattatattggactattgctaacatgattatattgga |
142 |
Q |
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| T |
35075484 |
attacaaaagggttaaaagtccaaatttgtatcatccaaccataaattgcaaccgacagtcttgattatattggactattgctaacatgattatattgga |
35075385 |
T |
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| Q |
143 |
gtatagctagctaacacattgcttgttttggtaattcaatactgattttcacaacattatgagtgggaatttttcagtatagtttagcaaaagagacaag |
242 |
Q |
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| T |
35075384 |
gtatagcta----acacattgcttgttttggtaattcaatactgattttcacaacattatgagtgggaatttttcagtatagtttagcaaaagagacaag |
35075289 |
T |
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| Q |
243 |
cctctaaccaaagtttgaaacttaattaaaagagatgtttatatttaatgtcggtctcaaataggatttccttccctagaggtaacctatgagaaatt |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35075288 |
cctctaaccaaagtttgaaacttaattaaaagagatgtttatatttaatgtcggtctcaaataggatttccttccctagagataacctatgagaaatt |
35075191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 35075566 - 35075517
Alignment:
| Q |
153 |
ctaacacattgcttgttttggtaattcaatactgattttcacaacattat |
202 |
Q |
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| T |
35075566 |
ctaacatattgtttgttttggtaattcattactgatcttcccaacattat |
35075517 |
T |
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