View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_45 (Length: 395)
Name: NF2729_low_45
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_45 |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 48 - 395
Target Start/End: Complemental strand, 39489006 - 39488659
Alignment:
| Q |
48 |
acttctagctacacctacaagagcatgggcagctttgttcttacatcttttaacagcaacaacacttacatttaataaactaaccaaaatgtctaaacag |
147 |
Q |
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| T |
39489006 |
acttctagctacacctacaagagcatgggcagctttgttcttacatcttttaacagcaacaacacttatatttaataaactaaccaaaatgtctaaacag |
39488907 |
T |
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| Q |
148 |
tcaacaataatgaaatcaatttcaacacagttcatcttccccataatacagttgactacattagcagcatccatctcaatcaccacattttggaggtttt |
247 |
Q |
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| T |
39488906 |
tcaacaataatgaaatcaatttcaacacagttcatcttccccataatacaattgactacattagcagcatccatctcaatcaccacattttggaggtttt |
39488807 |
T |
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| Q |
248 |
gagtctttacccattgcaggcaccatctcaatcccaacgcctcagccagatttggggaacatgtgatcctctcgctcttggtggctgcaacttgtacgac |
347 |
Q |
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| T |
39488806 |
gagtctttacccattgcaggcaccatctcaatcccaacgcctcagccatatttggggaacatgtgatcctctcgctcttggtggctgcaacttgtacgac |
39488707 |
T |
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| Q |
348 |
accttcatggtccctacttattaaaccccaacacgtgtagttatcttt |
395 |
Q |
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| T |
39488706 |
accttcatggtccctactgattaaaccccaacaagtgtagttatcttt |
39488659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 39494227 - 39494178
Alignment:
| Q |
9 |
aggagcagagacattcccaatccattccttagtacctacacttctagcta |
58 |
Q |
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| T |
39494227 |
aggatcagggacattcccaatccattccttagtacctacacttctagcta |
39494178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 101 - 395
Target Start/End: Complemental strand, 46035075 - 46034781
Alignment:
| Q |
101 |
cagcaacaacacttacatttaataaactaaccaaaatgtctaaacagtcaacaataatgaaatcaatttcaacacagttcatcttccccataatacagtt |
200 |
Q |
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| T |
46035075 |
cagcaacaacacttacatttaataaactaactaaaatgtctaaacagtcaacaataataaaatcaatttcaacacagttcatcttccccataatacagtt |
46034976 |
T |
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| Q |
201 |
gactacattagcagcatccatctcaatcaccacattttggaggttttgagtctttacccattgcaggcaccatctcaatcccaacgcctcagccagattt |
300 |
Q |
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| T |
46034975 |
gactacattagcagcatccatctcaatcaccacattttggaggttttgagtctttacccattgcaggcaccatctcaaacccaacgcctcagccagattt |
46034876 |
T |
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| Q |
301 |
ggggaacatgtgatcctctcgctcttggtggctgcaacttgtacgacaccttcatggtccctacttattaaaccccaacacgtgtagttatcttt |
395 |
Q |
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| T |
46034875 |
ggggaacatgtgatcctctcgctcttggtggctgcaacttgtacgacaccttcatggtccctactgattaaaccccaacaagtgtagttatcttt |
46034781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 46035143 - 46035072
Alignment:
| Q |
9 |
aggagcagagacattcccaatccattccttagtacctacacttctagctacacctacaagagcatgggcagc |
80 |
Q |
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| T |
46035143 |
aggatcagggacattcccaatccattccttagtacctacacttctagctacacctacaagagcatgggcagc |
46035072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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