View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_46 (Length: 392)
Name: NF2729_low_46
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 377
Target Start/End: Original strand, 5460560 - 5460921
Alignment:
| Q |
16 |
atcttaagaattgagagggttaacgtgcttggttccaacttcattcactaatattataacaattgctaatatctcacttaatgtttatcattttgtggtt |
115 |
Q |
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| T |
5460560 |
atcttaagaattgagagggttaacgtgcttggttccaacttcattcactaatattataacaattgctaatatctcacttaatgtttatcattttgtggtt |
5460659 |
T |
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| Q |
116 |
ataaaattataagctattcacgttgtatatatacattatatcctaattgtttcaagttttatttattttttaacgcaatggtacttatgaagtttgtttc |
215 |
Q |
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| T |
5460660 |
ataaaattataagctattcacgttgtatatatacattatatcctaattgtttcaagttttatttattttttaacgcaatggtacttatgaagtttgtttg |
5460759 |
T |
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| Q |
216 |
agtatttaccccttatctaatcatttaaaacgaattcaaattttttaaaaatttgatctatgagataccgatatccaaccaaattttaagaaaatataga |
315 |
Q |
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| T |
5460760 |
agtatttaccccttatctaatcatttaaaacaaattcaaatttttaaaaaatttgatctatgagataccgatatccaaccaaattttaagaaaatataga |
5460859 |
T |
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| Q |
316 |
gatttatcttattannnnnnnnnnnnnagtttcctttgagggattctttttataaagttatt |
377 |
Q |
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| T |
5460860 |
gatttatcttattatttttctttttttagtttcctctgagggattctttttataaagttatt |
5460921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 304
Target Start/End: Complemental strand, 48267937 - 48267897
Alignment:
| Q |
264 |
aaatttgatctatgagataccgatatccaaccaaattttaa |
304 |
Q |
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| T |
48267937 |
aaattttatgtatgagataccgatattcaaccaaattttaa |
48267897 |
T |
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