View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_54 (Length: 349)
Name: NF2729_low_54
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 36 - 325
Target Start/End: Complemental strand, 27041653 - 27041364
Alignment:
| Q |
36 |
aacctgtgtgggaaagagaaaaacaagttggatcaatagctataaaaccttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt |
135 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27041653 |
aacctgtgtgggaaagagaaaaacaagttcgatcaatagctataaaaccttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt |
27041554 |
T |
|
| Q |
136 |
aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataacaggacttaaattgagtttgatgaatnnnnnnnnnnnn |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27041553 |
aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataacaggacttaaattgagtttgatgaataaaaatgaaaaa |
27041454 |
T |
|
| Q |
236 |
ntaaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatggtttaacagtg |
325 |
Q |
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| T |
27041453 |
atgaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttaacagcaatggtgaaacagtg |
27041364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 36 - 330
Target Start/End: Complemental strand, 27086131 - 27085837
Alignment:
| Q |
36 |
aacctgtgtgggaaagagaaaaacaagttggatcaatagctataaaaccttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt |
135 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27086131 |
aacctgtgtgggaaagagaaaaacaagttggatcaatagctatacaaacttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt |
27086032 |
T |
|
| Q |
136 |
aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataacaggacttaaattgagtttgatgaatnnnnnnnnnnnn |
235 |
Q |
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| T |
27086031 |
aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataagaagacttaagttgagtttgatgaatgaaaatgaaaat |
27085932 |
T |
|
| Q |
236 |
ntaaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatggtttaacagtgctaac |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
27085931 |
ataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttaaaagcaatggtttaacagcgctaac |
27085837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 36 - 314
Target Start/End: Complemental strand, 27070075 - 27069797
Alignment:
| Q |
36 |
aacctgtgtgggaaagagaaaaacaagttggatcaatagctataaaaccttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt |
135 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| || ||||||||||||| |
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| T |
27070075 |
aacctgtgtgggaaagagaaacacaagttggatcaatagctatacaaccttttccacaatgtcccatggacagaaaatctgttgcattttcaccctttgt |
27069976 |
T |
|
| Q |
136 |
aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataacaggacttaaattgagtttgatgaatnnnnnnnnnnnn |
235 |
Q |
| |
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||||||| ||||||||| || ||||| ||||||| ||||||||||||||| |||| ||||||| ||||||| ||||||||||||||| |
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| T |
27069975 |
gaatcaaactaatactacaattattaagcaatattcttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaataaaagtgaaaaa |
27069876 |
T |
|
| Q |
236 |
ntaaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatg |
314 |
Q |
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|| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27069875 |
atagggtttacaacttttgaagttcttgcaggttatgtgtggaggtcaagagcaagagccttaaagcttagcagcaatg |
27069797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 36 - 314
Target Start/End: Complemental strand, 27063002 - 27062730
Alignment:
| Q |
36 |
aacctgtgtgggaaagagaaaaacaagttggatcaatagctataaaaccttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgt |
135 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| ||| | |||| ||||||||||| ||||||||| ||||||||||| || ||||||||||||| |
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| T |
27063002 |
aacctgtgtgggaaagagaaaaccaagttggaacaataactacacaaccatttccacaatgccccatggacagagaatctgttgcattttcaccctttgt |
27062903 |
T |
|
| Q |
136 |
aaatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataacaggacttaaattgagtttgatgaatnnnnnnnnnnnn |
235 |
Q |
| |
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|||||| |||||||| || ||||| ||||||||||||||||||||||| |||| ||||||| ||||||| |||||||||||||| |
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| T |
27062902 |
gaatcaacctaatactaaaattattaagcaatattgttttaaagtagagggcgaaacgataacaagacttaagttgagtttgatgaa------cgaaaat |
27062809 |
T |
|
| Q |
236 |
ntaaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27062808 |
ataaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatg |
27062730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 237 - 327
Target Start/End: Complemental strand, 27056764 - 27056675
Alignment:
| Q |
237 |
taaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatggtttaacagtgct |
327 |
Q |
| |
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||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
27056764 |
taaggttcacaacttttga-gtacttgcaggttatgtgtagaggtcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgct |
27056675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 325
Target Start/End: Complemental strand, 27105795 - 27105507
Alignment:
| Q |
37 |
acctgtgtgggaaagagaaaaacaagttggatcaatagctataaaaccttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgta |
136 |
Q |
| |
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|||||||||||||||||| | || ||||||||||| ||| | |||| |||||| || | || ||| || ||||||||| || ||||||| ||| | |
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| T |
27105795 |
acctgtgtgggaaagagagagacttattggatcaataactaaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg |
27105696 |
T |
|
| Q |
137 |
aatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataacaggacttaaattgagtttgatgaatnnnnnnnnnnnnn |
236 |
Q |
| |
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|||||| | || ||||| | || || ||||||||||||| || |||||||||||| ||||| ||||| |||||||||||||| |
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| T |
27105695 |
aatcaagacaacactacagttatgaagaaatattgttttaatgtggagggtgaaatgttaacaaagcttaagttgagtttgatgaaggaaagtggaggta |
27105596 |
T |
|
| Q |
237 |
taaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatggtttaacagtg |
325 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||| |
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| T |
27105595 |
taaggttcacaacttttgaatcaattgcaggttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtg |
27105507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 316
Target Start/End: Complemental strand, 27098796 - 27098517
Alignment:
| Q |
37 |
acctgtgtgggaaagagaaaaacaagttggatcaatagctataaaaccttttccacaatgtcccatggaccgagaatctgtttcactttcaccctttgta |
136 |
Q |
| |
|
|||||||||||||||||| | || ||||||||||| || | |||| |||||| || | || ||| || ||||||||| || ||||||| ||| | |
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| T |
27098796 |
acctgtgtgggaaagagagagacttattggatcaataactgaacaaccatttccagaaagccctatgaacaaggaatctgttgcattttcaccttttctg |
27098697 |
T |
|
| Q |
137 |
aatcaaaataatactacgataattaaacaatattgttttaaagtagagggtgaaatgataacaggacttaaattgagtttgatgaatnnnnnnnnnnnnn |
236 |
Q |
| |
|
|||||| | || ||||| | || || |||||||||||||| | || ||||||||||||||| | ||||| ||||| |||||||| |
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| T |
27098696 |
aatcaacacaacactacagttatgaagcaatattgttttaatattgatggtgaaatgataacaaggcttaagttgagcttgatgaaggaaagtggaaata |
27098597 |
T |
|
| Q |
237 |
taaggttcacaacttttgaagtgcttgcaggttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatggt |
316 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
27098596 |
taaggttcacaacttttgaatcaattgcaggttatgtttggagatcaagagcaagagccttaaaacttaacagcaatggt |
27098517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 315
Target Start/End: Complemental strand, 27045834 - 27045787
Alignment:
| Q |
268 |
ttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatgg |
315 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
27045834 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatgg |
27045787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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