View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_56 (Length: 333)
Name: NF2729_low_56
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 27945762 - 27945448
Alignment:
| Q |
1 |
ttgtgaggaataggaaggccaaccattgaattatcatatccaacaagtcttgaaaggaaggttggttcaagtatatgagatggaaaacatactactgtca |
100 |
Q |
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| T |
27945762 |
ttgtgaggaataggaaggccaaccattgaattatcatatccaacaagtcttgaaatgaaggttggttcaagtat--gagatggaaaacatactactgtca |
27945665 |
T |
|
| Q |
101 |
ctgagtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcctctgcaaatcttgtagtatccgttctctccccaa |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27945664 |
ctgagtattagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcccctgcaaatcttgtagtatccgttctctccccag |
27945565 |
T |
|
| Q |
201 |
gtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcatatcagctccagctccagaaccataccccacaagcaaaactccaagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27945564 |
gtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcatatcagctccagctccagaaccataccccacaagcaaaactccaagat |
27945465 |
T |
|
| Q |
301 |
ccagcctccttgtacat |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
27945464 |
ccagcctccttgtacat |
27945448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 6 - 317
Target Start/End: Complemental strand, 27437270 - 27436956
Alignment:
| Q |
6 |
aggaataggaaggccaaccattgaattatcatatccaacaagtcttgaaaggaa-----ggttggttcaagtatatgagatggaaaacatactactgtca |
100 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| ||||||||||||||| ||| ||||||| || |||| ||||| |||| ||||||||||||| |
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| T |
27437270 |
aggaataggaaggccaaccattggatgatcatattcaacaagtcttgaaatgaaatgaaggttggtacatgtat--gagatagaaatcatactactgtca |
27437173 |
T |
|
| Q |
101 |
ctgagtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcctctgcaaatcttgtagtatccgttctctccccaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27437172 |
ctgagtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcctctgcaaatcttgtagtatccgttctctccccag |
27437073 |
T |
|
| Q |
201 |
gtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcatatcagctccagctccagaaccataccccacaagcaaaactccaagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27437072 |
gtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcatatcagctccagctccagaaccataccccacaagcaaaactccaagat |
27436973 |
T |
|
| Q |
301 |
ccagcctccttgtacat |
317 |
Q |
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||||||||||||||||| |
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| T |
27436972 |
ccagcctccttgtacat |
27436956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 62 - 316
Target Start/End: Original strand, 27549020 - 27549260
Alignment:
| Q |
62 |
ttggttcaagtatatgagatggaaaacatactactgtcactgagtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatattt |
161 |
Q |
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|
||||||||||||| ||||||||||||||||||| |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27549020 |
ttggttcaagtat--gagatggaaaacatactacagtcagtgagttgtagtttgagcagcagccacagtagaaaccattgagtccactccacagatattt |
27549117 |
T |
|
| Q |
162 |
cgtcctctgcaaatcttgtagtatccgttctctccccaagtctcaccccacgagtttttaacgatccaatacggcttctccttctccttcatatcagctc |
261 |
Q |
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| T |
27549118 |
cgtcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagcttttaacaatccaatacgg------cttctccttcgtat------ |
27549205 |
T |
|
| Q |
262 |
cagctccagaaccataccccacaagcaaaactccaagatccagcctccttgtaca |
316 |
Q |
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|||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |
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| T |
27549206 |
aagctccagaaccgtaccccaccagcaaaactccatgatccagcctccttgtaca |
27549260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 105 - 245
Target Start/End: Complemental strand, 26766496 - 26766356
Alignment:
| Q |
105 |
gtagtagtgtgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcctctgcaaatcttgtagtatccgttctctccccaagtct |
204 |
Q |
| |
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|||||||| ||| | |||||||||||||||||||| ||||||||||| |||||||||||||| ||||| || || |||||||| || ||||||||||||| |
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| T |
26766496 |
gtagtagtatgaacggcagccacagtagaaaccatagagtccactccgcagatatttcgtcccctgcatattttatagtatccattttctccccaagtct |
26766397 |
T |
|
| Q |
205 |
caccccacgagtttttaacgatccaatacggcttctccttc |
245 |
Q |
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||||||| |||||||||| |||||||| |||||||||||| |
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| T |
26766396 |
caccccatgagtttttaattatccaatatggcttctccttc |
26766356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 27504001 - 27503968
Alignment:
| Q |
41 |
caacaagtcttgaaaggaaggttggttcaagtat |
74 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |
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| T |
27504001 |
caacaagtcttgaaatgaaggttggttcaagtat |
27503968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 7400625 - 7400539
Alignment:
| Q |
114 |
tgagcagcagccacagtagaaaccattgagtccactccacagatatttcgtcctctgcaaatcttgtagtatccgttctctccccaa |
200 |
Q |
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||||| ||||| ||||| || ||||| || ||||||||||| | |||||| |||||||| |||||||| ||||| | ||| |||||| |
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| T |
7400625 |
tgagctgcagcaacagtggagaccatggaatccactccacatacatttcggcctctgcagatcttgtaatatccttcctcaccccaa |
7400539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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