View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2729_low_57 (Length: 332)

Name: NF2729_low_57
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2729_low_57
NF2729_low_57
[»] chr1 (2 HSPs)
chr1 (112-332)||(24109847-24110067)
chr1 (15-113)||(24107713-24107811)
[»] chr8 (1 HSPs)
chr8 (15-112)||(24084268-24084365)
[»] chr6 (1 HSPs)
chr6 (18-101)||(17509053-17509136)
[»] chr4 (1 HSPs)
chr4 (49-107)||(9814758-9814816)
[»] chr5 (1 HSPs)
chr5 (144-208)||(18892063-18892127)
[»] chr3 (1 HSPs)
chr3 (144-208)||(17263221-17263285)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 112 - 332
Target Start/End: Original strand, 24109847 - 24110067
Alignment:
Q  112 cttcgaaaccaatccacgatcgcattagcagtcaaaagtgctacatgagagaaacaagtgttgagtgtcatccacatgaccacacccgaccacacaacat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  24109847 cttcgaaaccaatccacgatcgcattagcagtcaaaagtgctacatgagagaaacaagtgttgagtgtcatccacatgaccgcacccggccacacaacat 24109946  T
Q  212 cctccaacgtctcttttaaacaaattgttcgaaacaatccaagtttaatttttaggtaaaacaattattaatcagattatatttaccacatgaccgaatt 311  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||||||| | ||||    
T  24109947 cctccaacgtctcttataaacaaattgttcgaaacaatccgagtttgatttttagataaaacaattattgatcagattatatttaccacatgatcaaatt 24110046  T
Q  312 ccagattaccaagatatcatt 332  Q
    |||||||||| ||||||||||    
T  24110047 ccagattaccgagatatcatt 24110067  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 24107713 - 24107811
Alignment:
Q  15 caaaggagtcaaataagctgaaggaatgaccactgcgatttcagaccacctgtgtaaaatgtaaactgagaaaagtgatatgaaataacctgagtatct 113  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  24107713 caaaggagtcaaataagctgaaggaatgaccaccgcgatttcagaccacctgtgtaaaatgtaaactgagaaaagtgatctgaaataacctaagtatct 24107811  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 24084268 - 24084365
Alignment:
Q  15 caaaggagtcaaataagctgaaggaatgaccactgcgatttcagaccacctgtgtaaaatgtaaactgagaaaagtgatatgaaataacctgagtatc 112  Q
    |||||||| |||||||||||||||||||||| | |||||||||| |||| ||||||||| |||||||||||||| |||| | |||||||| |||||||    
T  24084268 caaaggagccaaataagctgaaggaatgaccgccgcgatttcaggccacgtgtgtaaaaagtaaactgagaaaattgatctaaaataaccagagtatc 24084365  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 17509053 - 17509136
Alignment:
Q  18 aggagtcaaataagctgaaggaatgaccactgcgatttcagaccacctgtgtaaaatgtaaactgagaaaagtgatatgaaata 101  Q
    ||||||||||||||||| ||||| |||| |  |||||||| |||||||||| | || |||||||||| |||||||| |||||||    
T  17509053 aggagtcaaataagctggaggaaggaccgcatcgatttcaaaccacctgtggagaaagtaaactgagtaaagtgatttgaaata 17509136  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 9814816 - 9814758
Alignment:
Q  49 gcgatttcagaccacctgtgtaaaatgtaaactgagaaaagtgatatgaaataacctga 107  Q
    |||||||||||||||||||| | ||  |||||||||||||||||| ||||||| |||||    
T  9814816 gcgatttcagaccacctgtggagaaaataaactgagaaaagtgatctgaaatatcctga 9814758  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 18892127 - 18892063
Alignment:
Q  144 caaaagtgctacatgagagaaacaagtgttgagtgtcatccacatgaccacacccgaccacacaa 208  Q
    ||||||||||||||||||| ||||||||||||  ||| ||| | ||||| ||||| || ||||||    
T  18892127 caaaagtgctacatgagaggaacaagtgttgaacgtcctcctcgtgaccgcacccaactacacaa 18892063  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 17263285 - 17263221
Alignment:
Q  144 caaaagtgctacatgagagaaacaagtgttgagtgtcatccacatgaccacacccgaccacacaa 208  Q
    ||||||||||||||||||| ||||||||||||  ||| ||| | ||||| |||||  ||||||||    
T  17263285 caaaagtgctacatgagaggaacaagtgttgaacgtcctcctcgtgaccgcacccatccacacaa 17263221  T

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